Escherichia coli O152 H28 SE11 (commensal): ECSE_3486
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Entry
ECSE_3486 CDS
T00784
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ecy
Escherichia coli O152:H28 SE11 (commensal)
Pathway
ecy02020
Two-component system
ecy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ecy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ECSE_3486
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ECSE_3486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecy03021
]
ECSE_3486
Transcription machinery [BR:
ecy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ECSE_3486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Tenui_NS3
Motif
Other DBs
NCBI-ProteinID:
BAG79010
LinkDB
All DBs
Position
3614805..3616238
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE
TQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTL
QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMGDEEIDIDEVEAVLK
RIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN
QHYASMCNNARNDDDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggcttagccaacaactggcgatgacgccacagctccaa
caggcaattcgtctgttgcagttgtcgacgctggaacttcagcaggagctacagcaggcg
ctggagagtaatccgctgcttgagcaaatcgacactcatgaagaaatcgacacccgcgaa
acgcaagacagtgaaacgctggacaccgccgacgcgctcgaacaaaaagagatgccggaa
gagctgccgctcgatgccagttgggacaccatttacaccgctggtacaccatccggcacc
agcggtgactacattgacgatgagctgccggtctatcagggcgaaacgacgcagaccttg
caggattacctgatgtggcaggtcgagctgacaccgttttccgacactgatcgcgctatt
gctacctctatcgtcgatgccgttgatgacaccggttatctgactgtcccgctggaagat
attctcgaaagtatgggcgatgaagagatcgacatcgacgaggttgaagccgtccttaag
cggatccaacggtttgatccggtcggtgtagcggcaaaagatctgcgtgactgcctgcta
atccaactctcccaattcgataaaaccacgccgtggctggaagaggccagactgatcatt
agcgatcatctcgatctgttagccaatcacgacttccgcactttaatgcgcgtcacgcgt
ctgaaagaagatgtgctgaaagaagccgtcaatctgatccagtcgctcgatccgcgcccc
gggcagtcgatccagactggcgaacctgagtatgtcattccagatgtgctggtgcgtaag
cataacggtcactggacggtagaactcaacagtgacagcattccgcgtctgcaaatcaac
cagcactacgcctcgatgtgcaataacgcgcgcaacgatgatgacagccagtttatccgc
agcaatctgcaggatgccaaatggttgatcaagagtctggaaagccgtaacgatacgcta
ctgcgcgtgagtcgctgtatcgttgaacagcagcaagccttctttgagcaaggtgaagaa
tatatgaaaccgatggtactggccgatatcgcccaggctgtcgaaatgcatgaatcgacg
atatctcgcgtgaccacgcaaaaatacctgcatagtccacgaggcatttttgaactgaag
tatttcttttccagtcacgtcaataccgagggcggcggcgaagcttcctccacggcgatt
cgtgcactggtgaagaaattaatcgcggcggaaaacccagcgaaaccgttgagcgacagc
aagttaacctctttactgtcggaacaaggtatcatggtggcacgccgcactgttgcgaag
taccgagagtctttatccattccgccgtcaaaccagcgtaaacagctcgtttga
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integrated database retrieval system
