Escherichia coli O152 H28 SE11 (commensal): ECSE_4476
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Entry
ECSE_4476 CDS
T00784
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecy
Escherichia coli O152:H28 SE11 (commensal)
Pathway
ecy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECSE_4476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecy03019
]
ECSE_4476
03016 Transfer RNA biogenesis [BR:
ecy03016
]
ECSE_4476
Enzymes [BR:
ecy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ECSE_4476
Messenger RNA biogenesis [BR:
ecy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECSE_4476
Transfer RNA biogenesis [BR:
ecy03016
]
Prokaryotic type
tRNA degradation factors
ECSE_4476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
BAG80000
UniProt:
A0A979GJJ9
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All DBs
Position
4678115..4680598
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AA seq
827 aa
AA seq
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MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD
SAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggtagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtcttcactcgtcgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtaccgttattggccaccgtgatggctacggctttctgcgggttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggcg
cagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctactttactgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtcgtagtcgaactgactcagcgtccgactcgccgcaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcaccggcatggcggttgatatc
gctctgcgtacccatgaaattccgtacatctggccgcaggctgttgagcaacaggttgcc
gggctgaaagaagaagtgccggaagaagcaaaagcgggccgtgttgatctgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcagtttactgcgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgccgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaaccgtggcacgtcggtgtacttccct
tcgcaggttatcccgatgctgccggaagtgctctctaacggcctgtgttcgctcaacccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgacg
ggctacaaattctacgaagcggtgatgagctctcacgcgcgtctgacctacaccaaagtc
tggcatattctgcagggcgatcaggatctgcgcgagcagtacgccccgctggttaagcat
ctcgaagagttgcataacctctataaagtgctggataaagcccgtgaagaacgcggtggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagacccagcgtaacgacgcgcacaaattaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagcgaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcgattacctctttccgttcagtgctggcggagctggggctg
gagctgccgggtggtaacaagccggaaccgcgtgactacgcggaactgctggagtcggtt
gccgaccgtcctgatgcagaaatgctgcaaaccatgctgctgcgctcgatgaaacaggcg
atttacgatccagaaaaccgtggtcactttggcctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgacgctgcaccgcgccattaagtatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggcggctaccattattcgatg
gaagagatgttgcaactgggtcagcactgttcgatggcggaacgtcgtgccgacgaagca
acgcgcgatgtcgctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatggtctggtccatgtctcttcgctggacaatgactactatcgctttgaccag
gtagggcaacgcctgatgggggaatccagcggccagacttatcgcctgggcgatcgcgtg
gaagttcgcgtcgaagcggttaatatggacgagcgcaaaatcgactttagtctgatctcc
agtgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggcaaaaaaggcggcaagcgtcgtcaggtcggtaaaaaggtaaactttgagccagac
agcgccttccgcggtgagaaaaaaacgaagccgaaagcggcgaagaaagacgcgagaaaa
gcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga
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