Escherichia coli O45 K1 H7 S88 (ExPEC): ECS88_1509
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Entry
ECS88_1509 CDS
T00830
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecz
Escherichia coli O45:K1:H7 S88 (ExPEC)
Brite
KEGG Orthology (KO) [BR:
ecz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecz03019
]
ECS88_1509 (hrpA)
Enzymes [BR:
ecz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECS88_1509 (hrpA)
Messenger RNA biogenesis [BR:
ecz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECS88_1509 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CAR02827
UniProt:
B7MM41
LinkDB
All DBs
Position
1500030..1503875
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPADY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKTRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELIIALIKSLPKPVRRNFV
PAPNFAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWSGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAIDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEVRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggagattacttacccggacaatttgccggtt
agtcagaaaaaacaggacattctcgaagcgattcgtgaccaccaggtggtgatcgtcgcc
ggggaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggtcgc
gggattaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcg
aaccgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcagagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttctcctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaattattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagctgatgacaccgagcgcgaccagttgcaggcgattttc
gatgccgtagatgaactgagccaggaaagccctggcgacattctgatttttatgagcggc
gagcgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccatacggaa
attcttccgctttatgcacggctttcgaacagcgagcagaaccgcgtcttccagtcgcac
agcggacggcgcattgtgctggcgactaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgttatcgacccaggtacggcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgc
tgcggtcgtgtgtcagaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggagtttaccgacccagaaattctgcgtactaacctggcctcggttattttgcag
atgaccgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacttccgcgctctctattcaggacccgcgtgagcggccaatggacaagcagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgc
ctgtgccgtactgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattat
cgcgaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttccggc
ttattcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tggggacgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttg
attaaacgcacctatagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactacgggccgaagtggaagaactg
gaacacaaaactcgtcgccgcgatattctggtggatgacgaaacgttgtttgagttctac
gaccagcgcatcagccacgatgtgatctccgcacgccatttcgacagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggg
gcggaaaaaatcagcaaactggattacccgaacttctggcatcagggcaatctcaaactg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtgcatatcccg
ctgccgctacttaaccaggttgaggagagtgggtttgagtggcagatccccggtctgcgt
cgtgagctgatcatcgccctgattaaatcgctgccgaagccggtacgccgtaattttgtg
cccgcgccaaacttcgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttg
ctcgacagccttgaacgagagttacggcggatgactggcgtcaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcactttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaa
gtgcaggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatc
tggagttttggtcaactgccggaaagctacgagcagaagcgcggcaactacaaagtgaag
gcttggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccg
ctggaacagaagcaggcaatgtggagcggtcttcgccgtttactgctgctaaatattcca
tcgccgatcaagtacttgcacgaaaagctgccaaacaaagccaagctggggctgtacttt
aacccgtatggcaaagtgctggagctgatcgatgactgtatctcatgcggtgtggataaa
ttaatcgacgccaacggcggtccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtccgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcg
ctggggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaacga
ctggaaaaactggcgattgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactaccgcctgcacgtcgtgaggatgaa
gacgtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaa
cttggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagc
ggttaa
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