Escherichia coli O45 K1 H7 S88 (ExPEC): ECS88_3465
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Entry
ECS88_3465 CDS
T00830
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ecz
Escherichia coli O45:K1:H7 S88 (ExPEC)
Pathway
ecz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ecz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ECS88_3465 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecz03021
]
ECS88_3465 (rpoD)
Transcription machinery [BR:
ecz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ECS88_3465 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
CAR04694
UniProt:
B7MB03
LinkDB
All DBs
Position
3428555..3430396
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDTADDDNSIDPELAREKFAELRAQYIVTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgatgctggctgaaaacaccgcggacgaagatgctgccgaagccgcc
gcgcaggtgctttccagcgtggaatctgaaatcgggcgcacgactgacccggtacgcatg
tacatgcgtgaaatgggcaccgttgaactgttgacccgcgaaggcgaaattgacatcgct
aagcgtattgaagacgggatcaaccaggttcaatgctccgttgctgaatatccggaagcg
atcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgat
ctgatcaccggctttgttgacccgaacgcagaagaagatttggcacctaccgccactcac
gtcggttctgagctttcccaggaagatctggacgatgacgaagatgaagacgaagaagat
ggtgacgacgataccgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaa
tttgcggaactgcgcgctcagtacattgtaacgcgtgacaccatcaaagcgaaaggccgc
agtcacgctgccgctcaggaagagatcctgaaactgtctgaagtattcaaacagttccgc
ctggtgccgaagcagtttgactacctggtcaacagcatgcgcgtcatgatggaccgcgtt
cgtacgcaagaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaagaaa
aacttcattaccctgtttaccggcaacgaaaccagcgatacctggttcaacgcggcaatt
gcgatgaacaagccgtggtcggaaaaactgcacgatgtctctgaagaagtgcatcgcgcc
ctgcagaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggttaaagat
atcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtt
gaagcgaacttgcgtctggttatttctatcgctaagaaatacaccaaccgtggcttgcag
ttccttgacctgattcaggaaggtaacatcggtctgatgaaagcggttgataaattcgaa
taccgccgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatcacc
cgttctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagactatc
aacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgtgaaccaacgccg
gaagaactggctgaacgcatgctgatgccggaagacaagatccgcaaagtgctgaagatc
gccaaagagccaatctccatggaaacgccgatcggtgatgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattctgcgaccaccgaaagcctg
cgtgcggcaacgcacgacgtgctggctggcctgaccgcgcgtgaagcgaaagttctgcgt
atgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgtcac
ccgagccgttctgaagtgctgcgtagcttcctggacgattaa
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