Escherichia coli O45 K1 H7 S88 (ExPEC): ECS88_3548
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Entry
ECS88_3548 CDS
T00830
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecz
Escherichia coli O45:K1:H7 S88 (ExPEC)
Pathway
ecz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECS88_3548 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecz03019
]
ECS88_3548 (pnp)
03016 Transfer RNA biogenesis [BR:
ecz03016
]
ECS88_3548 (pnp)
Enzymes [BR:
ecz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ECS88_3548 (pnp)
Messenger RNA biogenesis [BR:
ecz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ECS88_3548 (pnp)
Transfer RNA biogenesis [BR:
ecz03016
]
Prokaryotic type
tRNA degradation factors
ECS88_3548 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
CAR04776
UniProt:
B7MB85
LinkDB
All DBs
Position
complement(3516560..3518764)
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AA seq
734 aa
AA seq
DB search
MRRRSGINTSTVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtattaacaccagtaccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtatttgttaccgttgttggtcagaaaaaagccaaaccaggtcaggacttcttc
ccgctgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcgcccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagca
ctgtctctgtctggtattccgttcaatggtccgattggtgctgcccgcgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgagttgaaagagagcaaactggatctg
gttgttgcgggtactgaagccgctgtactgatggttgaatctgaagctgaactgctgagc
gaagaccagatgctgggcgcagtagtcttcggtcatgaacaacagcaggttgttattcag
aacatcaatgaactggtgaaagaagccggtaaaccgcgttgggattggcagccggagccg
gtaaacgaagcgctgaacgcgcgcgttgctgcgctggctgaagctcgtctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacactgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctg
cacgctatcgagaaaaatgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgac
ggtcgtgaaaaagatatgatccgtggtctggatgtgcgtactggtgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggt
actgctcgtgacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtaatgccggat
atggacaaattcccgtacaccgtacgtgttgtgtctgaaattaccgaatccaacggttcc
tcttctatggcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccaatc
aaagctgccgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggt
tcccgtgacggtatctctgcattgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcactgaaccaggctaaaggtgcgcgtctgcatatcctgggggtaatg
gaacaggcgatcaacgcgccgcgtggcgatatctctgagttcgcaccgcgtatccatacc
atcaagatcaacccggacaagatcaaagatgttatcggtaaaggcggttctgtaatccgt
gctctgaccgaagaaaccggcaccaccatcgaaattgaagatgacggtactgtgaagatt
gcagcgaccgacggcgagaaagcgaaacacgcgattcgtcgtatcgaagagatcactgca
gaaatcgaagtgggccgcgtctacaatggtaaagtgacccgtatcgttgactttggcgca
tttgttgccattggtggcggtaaagaaggtctggtccacatctctcaaatcgctgataaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagtgctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa
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