Edaphobacter sp. 12200R-103: GWR55_00895
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Entry
GWR55_00895 CDS
T06408
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
eda
Edaphobacter sp. 12200R-103
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eda03019
]
GWR55_00895
Messenger RNA biogenesis [BR:
eda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GWR55_00895
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
tRNA_anti_2
RMI2
CEP209_CC5
Motif
Other DBs
NCBI-ProteinID:
QHS50466
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Position
191707..192813
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AA seq
368 aa
AA seq
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MKDFFIADAPRFENAAVTSYFVLSSLQIRDRRTGGQFLSVTLTDKTGSMPAVMWDDFQES
ITPCSEGCYVKVQGQISRYQNKFQMALQRLRFAAETEIDPADYLPMTHFDIDAMWEELRG
YVLNFANADLRRLVFAFLDDPEIAAAYRVAPAAKILHHAWIGGLLEHVVTLVRVCLATAP
FYPEVDPDLLVTGAILHDIGKIRELHWKSSFGYTLEGQLIGHINIAQGMLADKFRQLDPF
PQKLRVLVEHMILSHHGKYEFGSPKLPMTPEALLLNTLDDLEAKMQTLRNAFASAAAQGR
GAGEVTDWVRSMERPLFNSRAYLTEGATPEEDITAAAGERTVDEPVVREDAVEEPGVVTE
PAGGSLFD
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttttttattgcggacgctccccgcttcgagaatgcggccgtcacgtcctac
tttgttctgtcttcgttgcagattcgtgatcggcgcaccggtgggcagtttctgtctgtc
accctgaccgacaagaccggttcgatgcccgcagtcatgtgggacgactttcaggagtca
atcactccctgttctgagggctgctacgtcaaggtgcagggccagatctccaggtatcag
aacaagttccagatggcccttcagcggctccgcttcgccgccgagacggagatcgatccg
gctgactatcttccgatgactcacttcgacatcgatgccatgtgggaggagttgcgtggc
tacgtcctgaactttgccaacgccgatcttcggcgtcttgtattcgcgttcctggatgat
cctgagatcgcggcggcctatcgggtcgcacccgcagccaagatcctccaccacgcctgg
atcggcggcctattggagcatgtggtgaccctggttcgggtatgcctcgcgaccgcgccg
ttctacccggaggtagaccccgacctgctggtgaccggggccatcctgcacgatatcggc
aagattcgcgagctgcactggaagtcgagcttcggctacacccttgagggacagttgatc
ggccatatcaatattgcccagggtatgctggctgataagttccgccaactggaccccttc
ccgcagaagctgcgtgtgttggtggagcacatgatcctctcccatcatggaaagtatgag
ttcggctcgcccaagctgccgatgacccccgaagccctgctgctgaatacgctggacgat
ctcgaggccaagatgcagaccctgcggaatgcctttgccagcgccgccgcccagggcagg
ggagcgggagaggtgaccgactgggtgcgctcgatggagcggccgctcttcaactcaagg
gcttatctaacggaaggagccacccctgaggaggatattactgctgccgcaggcgagaga
acggtggatgagccagtggttcgggaagatgcggtggaggaacccggcgttgtcacggaa
ccagcaggtggcagcctcttcgactag
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