Edaphobacter sp. 12200R-103: GWR55_03020
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Entry
GWR55_03020 CDS
T06408
Symbol
pdxS
Name
(GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda00750
Vitamin B6 metabolism
eda01100
Metabolic pathways
eda01240
Biosynthesis of cofactors
Module
eda_M00916
Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
GWR55_03020 (pdxS)
Enzymes [BR:
eda01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
GWR55_03020 (pdxS)
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Gene cluster
GFIT
Motif
Pfam:
SOR_SNZ
ThiG
NanE
His_biosynth
DHO_dh
NMO
Slp
GRDA
DUF5784
Motif
Other DBs
NCBI-ProteinID:
QHS53629
LinkDB
All DBs
Position
complement(718335..719288)
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AA seq
317 aa
AA seq
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MADHTSNGNLGSSSLRLKTGLAEMLKGGVIMDVMNVVQAEIAEEAGATSVMALERVPAMI
RAEGGVARMANPKLIKGIIAAVSIPVMAKARIGHFAEAQVLQELGVDFIDESEVLTPADE
TYHIDKHAFTTPFVCGARNLGEACRRIAEGAAMIRTKGEAGTGDVVHAVQHMRQIVREMK
ALTVLDEGELYNQAKLHQAPYELIRMVAQTGKLPVPNFSAGGIATPADAALMMQLGAEAV
FVGSGIFMKERATPLDVENNPKEREEAVSRAKAIVIATTHYNDPKIVAEASETVTGTMKG
LAAAALEEHELLQTRGW
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccacacctcaaacggcaatctcggatcctcttcccttcgtctcaagaccggc
ctggccgagatgctcaaaggcggcgtgatcatggacgtcatgaacgtcgttcaggctgag
atcgccgaagaggccggcgccacctccgtcatggcgctcgagcgcgttccggccatgatc
cgcgccgaaggcggcgtcgcccgcatggcgaaccccaagctcatcaagggcatcatcgca
gccgtctccattcccgtcatggcgaaggcccgcatcggccacttcgccgaagcccaggtc
ctccaggagctcggcgtcgacttcatcgacgagtccgaggttctcacccccgccgacgag
acctaccacatcgacaaacacgccttcaccactcccttcgtctgcggcgcccgcaacctc
ggcgaggcctgccgccgcatcgctgaaggcgcagccatgatccgcaccaagggcgaggcc
ggaaccggcgacgtcgtccacgccgtccagcacatgcgccagattgtccgcgagatgaag
gctctcaccgtcctcgacgagggcgagctctacaaccaggccaagctccaccaggcgccc
tacgaactcatccgcatggtcgcccagaccggcaagctccccgtccccaacttctccgcc
ggtggcatcgccacccccgctgacgccgccctcatgatgcagctgggcgccgaggccgtc
ttcgtcggctccggaatcttcatgaaggagcgtgccaccccgctcgacgtcgagaacaac
cccaaggagcgcgaagaggctgtctcccgcgccaaggctatcgtcatcgccactacccac
tacaacgaccccaagatcgtagccgaagcttccgagaccgtcaccggtaccatgaagggc
ctcgccgcggccgccctcgaagagcacgaactcctccagacccgcggctggtga
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