Edaphobacter sp. 12200R-103: GWR55_03040
Help
Entry
GWR55_03040 CDS
T06408
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWR55_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eda03019
]
GWR55_03040
03400 DNA repair and recombination proteins [BR:
eda03400
]
GWR55_03040
Enzymes [BR:
eda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWR55_03040
Messenger RNA biogenesis [BR:
eda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWR55_03040
DNA repair and recombination proteins [BR:
eda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GWR55_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QHS53630
UniProt:
A0A6B9YVC4
LinkDB
All DBs
Position
complement(722101..724578)
Genome browser
AA seq
825 aa
AA seq
DB search
MDSNVLSDLLHRTFGFSGFRANQEAVCRAATEGRDVLLVMPTGAGKSLCYQLPAIARGGT
ALVISPLIALMDDQAAKLSALGLRVARIHSGLPREQSRQACREYLDGTLQFLFIAPERMR
VPGFPEMLAKRKPALIAIDEAHCISQWGHDFRPDYRTLGEYLPSLRPAPVIALTATATPT
VQRDIAAQLRLQNPALFIHGFRRHNLAIEVVELSKPRRSQFAVDLLKSAANRPAIVYAPS
RKAAEELASQLGGSAAAYHAGLDPATRERVQRHFLSGNLEIVVATIAFGMGIDKPDVRTV
IHTALPASVEAYYQEIGRAGRDGLPSRTVLLHSFADRKMHHFFLERDYPAPTELARLARV
LTGDFQAPDDLRKITRMDLETFERTAHKLVAQGAAAFDIAGNLRAGENRSWQSGYDQQLA
FRRSQIDLMARFAETPQCRMTALIQHFGDTADGLRPCGHCDFCSPERATAQTFRTPTPQE
ERQLRAILGALDGASPRATGKLHSDLSLGIDRKQFDIYLNALIRAGFLTLSIDSFTNAEG
NVITFKRASLTHEGRTLDHNDDLAVLLPGNDHTAAPAKKRDRTTNRRGRTTSEASSRPEA
RRAGAERSASPSLTPAQKTLEQQFRDWRKAEAAKTGKPAFIVFGDSVLLNIVQAQPQTIQ
ELLNVSGIGPEKADRYGAAIIALCRNQDGRDENSDTTPPAADVSFRAKHQSRVEPALSEG
EWEDLPHLSRIATESAPQKPPPAAAQLQPPTLTSAQQALETRLRDWRTAEAERLGMPQFF
VLGSSTLRNIALEQPRTLAHLKKVDGISLEKAEKFGASILEICAS
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaacgtactctcagatctcctccacaggactttcggcttctccggcttccgc
gccaatcaggaagccgtatgccgcgctgccacggagggccgtgatgtcctgcttgtcatg
cctaccggggctggaaagtctctctgctatcaattgcccgcaattgcccgcggtggcacg
gcgcttgtcatatcgcccctgatcgccctcatggacgatcaggctgcgaagctctccgca
cttggattgcgcgtcgcccggattcactccgggcttccccgcgaacagtctcgtcaggca
tgccgtgaatatttggacggcaccctccagtttctcttcatcgccccggagcgcatgcgt
gttcccggcttccccgagatgctcgccaaacgaaagcctgcgttgatcgccatcgatgag
gcgcactgcatctcgcaatggggtcatgattttcgtcccgattaccgcacactcggagag
tacctcccttccctgcggcccgcgccggtcatcgctctcaccgccacagcaaccccaacc
gttcagcgcgatatcgcggcgcagcttcgtctccagaatcccgcgctgttcatccacggc
ttccgccgccacaatctcgccatcgaagtggtcgagctctcaaagccgcgacgcagccag
ttcgctgtcgacctgctgaagtccgcggcgaaccgccccgccatcgtctatgctccgtca
cgcaaagccgcagaagagcttgcgtcacagctcggaggcagtgccgccgcctatcacgcc
ggcctggaccccgccacgcgggagcgcgtgcagcgccacttcctctcaggcaatcttgaa
atcgtcgtcgccaccatcgccttcggcatgggaatcgacaaacctgatgtccggaccgtc
atccacaccgcgcttcctgcctccgtcgaagcctactaccaggagatcggacgcgccggt
cgcgacggccttccctcgcgcaccgtcctgcttcattcctttgcggaccgcaagatgcac
cactttttcctcgagcgcgactaccccgctcccaccgaattagcgcgtctcgcccgcgtc
ctcaccggcgacttccaggcccccgacgatctccgcaagatcacccgcatggacctcgag
accttcgagcgcactgcacacaaactcgtcgcccaaggcgcagccgccttcgatattgcg
ggcaatctccgcgccggagaaaaccgttcctggcagtccggctacgatcagcagctcgcc
ttccgtcgctcgcagatcgacctgatggcgcgcttcgccgaaaccccgcagtgccgcatg
actgccctcatccagcacttcggcgataccgccgacggcctgcgcccctgcggccactgc
gacttctgctcgcccgaacgcgccacggcgcagaccttccgcacacccactccgcaggaa
gagcgccaactccgcgccatcctcggagcgctcgacggagcaagcccgcgagccaccggc
aagctccacagcgatctttcgctcggcatcgatcgcaagcaattcgacatctacctcaac
gcgctcatacgcgccggattcctcaccctcagcatcgattccttcaccaacgccgaaggc
aacgtcatcacattcaagcgcgcatcgctcacccacgaaggccgcacgctcgaccacaat
gacgatctcgccgtcctgctccccggcaatgaccacacggcagctcccgcaaagaagcgc
gaccgaacgacaaaccgtcgggggcgcaccacttccgaagcgtcatcccgacctgaggct
cgaagggccggagcagagagatctgcttctccatccctcacccccgcacagaagaccctc
gagcagcagttccgcgactggcgcaaagccgaagccgcaaagaccggcaaacccgctttc
atcgtttttggagattctgtcctcctcaacatcgtccaggcacaaccccaaacgatccag
gaacttctgaacgtctccggcattggccccgaaaaagcggaccgttacggtgccgcgatc
atcgcgctatgccgaaatcaagatggacgagacgaaaactcggataccactccacctgcg
gcagacgtgtcattccgagcgaagcatcaaagccgcgtagaacctgccctaagcgaagga
gaatgggaggacctcccgcatctttcccgtattgccacggaatcggctcctcaaaaacca
cctccggctgccgcgcaactacaaccacctaccctgacctcggcccagcaggcactcgaa
actcgtctccgggactggcgcaccgccgaggccgagcgcctcggcatgccccagttcttc
gtcctcggctcttccactctgcgcaatatcgcgcttgagcagcctcgaaccctcgcacat
ctcaaaaaagttgatggcatcagcctcgaaaaggccgaaaagttcggtgccagcatcctt
gagatctgcgctagctag
DBGET
integrated database retrieval system
