Edaphobacter sp. 12200R-103: GWR55_03200
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Entry
GWR55_03200 CDS
T06408
Name
(GenBank) oligogalacturonate lyase
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda00040
Pentose and glucuronate interconversions
eda01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
GWR55_03200
Enzymes [BR:
eda01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
GWR55_03200
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase22
PD40
CBM39
APH-like_N
DUF5050
Motif
Other DBs
NCBI-ProteinID:
QHS50857
UniProt:
A0A6B9YMJ1
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Position
complement(774108..775433)
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AA seq
441 aa
AA seq
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MQFSSARTILVTASIVALSCPLILAQARPDTRPPDKMPTQEELKNPPKTWIDKDTGHRVT
RLTDEPGSASFYFNVNGYTPDGTEMVYTTPDGINVLNLRTHATRNVVKGKVRTMEVGHKT
PSIFYIKAEDNTIYKTNVDTGETKMLAKVPPRGRVITVNADETLAAGTYDEVDKPNEQFG
RNGGKVTSPSSPQTSPLEQAANKGEMMERRLAARIPLVLFTIDLTGSAKITPLLHSTDWV
NHLLFSPTDPTLLMYCHEGPWQKVDRIWTIHTDGTHNQLMHQRHMPGEIAGHEFWGKDGE
TIYYDLQTPKGEDFWLASVNVKTNKRIWYHLQRNEWSIHFNVNKDATLFTGDGGDPRQVA
KAKDGEWIYLFHPEILKTNGITDDSWPTPGVFHAERLVNMSKHNYTLEPNVSFTPDGKMI
IFRSNMFGPTYVFGVDISKEP
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcttctgcacgaacgatcctggtcaccgcatctatcgtcgccctctcatgt
cctctcatcctggcccaggcacgtccggacacccgcccgcccgacaaaatgccgacccag
gaagagttgaagaacccgcccaaaacgtggatcgacaaagacacagggcatcgcgtaacc
cggcttacagatgagcccggttcggccagcttctacttcaacgtcaacggctacacgccg
gacggcacggagatggtttataccacccccgatgggattaatgtgctgaatctcaggacc
catgccactcgcaatgttgtgaaaggcaaggtccgcacgatggaggtgggacacaagacc
ccgtcgatcttctacatcaaagcagaagacaacaccatctacaaaaccaacgtcgacact
ggcgaaaccaaaatgctggcgaaggttccaccacgtggccgagtcattaccgtaaacgct
gatgagacgctcgccgccggcacctatgacgaggtcgataaacccaacgaacagttcgga
cgcaatggcggcaaggtgaccagccccagtagtccccagaccagtccattggaacaggca
gccaacaagggcgagatgatggagaggcggctggccgcccgcattccgctggtcctcttc
acgatagaccttaccggcagcgcaaaaattactcccttgctccacagcactgactgggtc
aatcatctgttgttttcaccgaccgatccgacattgctaatgtactgccacgaaggtccc
tggcagaaggtagaccgcatctggacgattcataccgacggaacgcacaatcagctgatg
caccagcggcatatgccgggtgagattgcaggccatgagttctggggaaaagatggcgag
acgatctactatgacctgcagactcccaaaggggaggatttctggctggcatccgtaaat
gtaaagacgaacaaacgtatctggtatcatctgcagcgcaatgagtggtccattcacttc
aacgtgaacaaggatgcaacgctgttcaccggagacggtggcgatcctcgtcaggtcgct
aaggcgaaggatggcgagtggatttatctcttccatccggagatcctgaagacaaacggc
attaccgacgatagctggcctacgccgggagtcttccatgccgagcgtctggtgaacatg
tcgaagcacaactacacgctggaaccaaacgtcagctttactcctgatggaaagatgatc
atcttccgctcgaatatgtttggcccgacctatgtctttggcgtcgacatcagcaaagag
ccgtaa
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