Edaphobacter sp. 12200R-103: GWR55_04860
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Entry
GWR55_04860 CDS
T06408
Name
(GenBank) PDZ domain-containing protein
KO
K04771
serine protease Do [EC:
3.4.21.107
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda01503
Cationic antimicrobial peptide (CAMP) resistance
eda02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GWR55_04860
09160 Human Diseases
09175 Drug resistance: antimicrobial
01503 Cationic antimicrobial peptide (CAMP) resistance
GWR55_04860
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
eda01002
]
GWR55_04860
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
eda03110
]
GWR55_04860
Enzymes [BR:
eda01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.107 peptidase Do
GWR55_04860
Peptidases and inhibitors [BR:
eda01002
]
Serine peptidases
Family S1: chymotrypsin family
GWR55_04860
Chaperones and folding catalysts [BR:
eda03110
]
Other chaperones and cochaperones
DegP / HtrA
GWR55_04860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Trypsin_2
PDZ_2
Trypsin
PDZ_6
PDZ
PDZ_1
Peptidase_S46
PDZ_Tricorn
Pept_S41_N_bact
Motif
Other DBs
NCBI-ProteinID:
QHS51138
LinkDB
All DBs
Position
1176753..1178402
Genome browser
AA seq
549 aa
AA seq
DB search
MDTPTRKFKSWFERTRSHRLTTTFALLATLSAGILVGSVITGGVSGKEQAPDSSDAKPLT
IPAAKTLSNGFSQIAKQVGPAVVNINTESLPKQLDNRRGRRGPQRGTPGDDDDQQNDMQD
FFNRFFGNPGGGDDGDGMMGAERRALGSGFIVDPRGYIITNNHVVDKADKIYVRLSTDPN
NGPDSEGRPAKIIGTDKDTDIAVIKIESDKPLPTIKLGNSDGAQVGDWVLAIGSPFGLSQ
TVSAGIVSAKNRSIDEPSPSGISQSQFQRFIQTDAAINPGNSGGPLVNMDGEVIGMNTAI
YTQSMGSQGVGFAMPSNIIANVYNMLIGPEHKVVRGSIGISFQSSTSSAVGRIYGFKNGI
IVSTVTPNGGAAKAGIKPGDVIVSIDGRQIKDGDDLVNDISGRKVGSTVKLGYLRDGKQG
TADVTIGDRAKTYADLMGDNGDDDNSPQESDAGQTKLGITVAAIPASVAQKTGISRGVIV
MSVRPGSFADEIGLGKGAIITEINKKAVTDEASYRSIVSGLKSKDDVVFVIHSPLRKDSG
NSYVGGTLP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggatacaccgacaagaaagttcaagagctggttcgaacgcacgcgcagccatcgcctt
acgacgaccttcgcccttctggccacgctttcggccggcatcctggtgggctcggtcatt
accggcggtgtcagcggcaaagagcaggcgcctgacagctctgacgcgaagccgctgacc
attccggcagcgaagacgctttcgaatggcttttctcagatcgccaagcaggtggggcct
gctgtcgttaacatcaataccgaatctctgccgaaacaactcgacaatcggcgtggccgt
cgcggacctcagagggggacaccgggtgatgatgacgatcagcagaacgatatgcaggat
ttcttcaatcgcttcttcgggaatcctggtggaggcgatgatggcgatggcatgatggga
gctgaacggagagctcttgggtcagggttcatcgtcgacccccgcggttacatcatcacg
aacaaccatgttgtggataaagctgacaaaatctacgtccggctttcgaccgatcctaat
aacgggccggactccgagggccgtcccgcaaagataatcggaaccgacaaggacaccgat
atcgctgtcatcaagatcgagtcagacaaacctctcccgaccataaagctcggaaattct
gacggagcgcaggtcggagactgggttctggcgattggcagcccgtttggcctttcgcag
acagtctcggccggtatcgtctcggccaagaaccgctccatcgatgaaccatcgccttca
gggatttcgcaatcccagttccagcgcttcatccagacggatgccgccatcaaccccggt
aactccggcggtccactagtcaatatggatggcgaggtcattggaatgaacactgcgatc
tatacccagtcgatgggatcgcagggtgtgggatttgcgatgccgtccaacatcatcgca
aacgtctacaacatgttgatcggaccggaacacaaggtcgtgcgcggctctatcggcatc
agcttccagtcttcaaccagttctgcagttggccgtatctacggtttcaagaacgggatt
atcgtttccaccgtgacgccgaacggcggggcggccaaggctggcatcaagccgggtgac
gtcattgtctccatcgacggccgccagattaaggacggcgacgatctggtgaacgacatc
tcgggacggaaggttgggagcaccgtcaagctggggtatctccgtgatggcaagcagggt
acggcagacgtcaccatcggggatcgcgccaagacctatgcggacctgatgggtgacaac
ggtgatgacgataactccccgcaggagtccgatgccggacagacgaagctgggcatcacg
gtagcggccattccggcctcggtagcgcagaagaccggcatcagccgtggcgtcatcgtg
atgagcgtgcgtccaggctcgttcgcagacgagatcgggcttggcaagggagcaatcatc
accgagatcaacaagaaggctgtaacagacgaagcgtcatacagaagcatcgtctccggc
ctcaaatccaaggatgacgtggtgttcgtcatccattcgcctctacgaaaggacagcggc
aactcctacgtgggaggaacgcttccataa
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