Edaphobacter sp. 12200R-103: GWR55_05140
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Entry
GWR55_05140 CDS
T06408
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda00540
Lipopolysaccharide biosynthesis
eda01100
Metabolic pathways
eda01250
Biosynthesis of nucleotide sugars
Module
eda_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
GWR55_05140 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
eda01005
]
GWR55_05140 (rfaD)
Enzymes [BR:
eda01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
GWR55_05140 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
eda01005
]
Core region
GWR55_05140 (rfaD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
ThiF
Motif
Other DBs
NCBI-ProteinID:
QHS51188
UniProt:
A0A6B9YND4
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All DBs
Position
1235768..1236739
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AA seq
323 aa
AA seq
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MIIVTGGAGFIGSNLVHELNRIGHKDILVVDNLAPAPNLSGPKFLNLHGAEFSDYMDKRE
FREVLKAGLIDGSKVRAILHQGACSNTLEDDGRYMMDNNFTYSKELLHFALEHRIPFVYA
STAATYGASTSFKEVPENEKPLNIYGYSKLVFDNYVRRLMPEIKSTVVGLRYFNVYGQRE
QHKGRMASVMHHFTKQLKETGVIRMFEGSGGYGDGEQRRDFVYVGDLARINMFFAGLLAD
QKGPQNVQAVVNAGTGEARTFKAVAEALMSVHGRGKIEYIPFPGDLKNRYQHFTQADVEG
LRKAGYVDPFTALEDGVKKTFPQ
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
ttgatcatcgttacgggcggcgcaggctttattggaagcaatctggttcacgagcttaac
cggatcggccataaggatattcttgtcgtcgacaatctggcgcctgcccccaacctcagc
ggaccgaagtttctcaatctgcatggcgcggagttctccgattacatggacaagcgtgaa
tttcgcgaggttctcaaggctggcctgattgacgggagcaaagttcgagcaattctccac
cagggcgcctgttccaacacactcgaagacgatggccgctacatgatggacaacaacttc
acctactccaaagaactgctgcacttcgcgctcgagcaccggattcccttcgtctacgcc
tcgaccgccgcaacctatggagccagcacctccttcaaggaggtgcctgagaacgagaag
ccgctgaatatctacggttattcaaagcttgtcttcgacaattatgtgcggcgccttatg
cctgaaattaaaagcacagtggtcggcctgcgttatttcaacgtttacggccaacgagaa
caacacaaaggtcgcatggcgagcgtgatgcaccacttcacgaagcagctcaaagagact
ggcgttattcgaatgtttgaaggatcgggtgggtatggcgatggagaacagcgccgtgat
tttgtctatgtaggcgacctggcccgaatcaatatgttttttgcaggattactggccgat
cagaagggccctcaaaatgtccaagcagttgtgaacgcgggaaccggagaagcgcgcacc
ttcaaggccgtcgctgaagcattaatgagcgttcatggccggggaaagatcgaatacatt
ccatttcccggggatctcaaaaatcggtatcaacacttcacgcaggcagacgttgaagga
ttgcggaaggccggttacgtggatcccttcaccgctctggaagacggagtcaaaaagaca
tttcctcaataa
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