Edaphobacter sp. 12200R-103: GWR55_09085
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Entry
GWR55_09085 CDS
T06408
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
eda
Edaphobacter sp. 12200R-103
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eda03009
]
GWR55_09085 (rimO)
Enzymes [BR:
eda01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
GWR55_09085 (rimO)
Ribosome biogenesis [BR:
eda03009
]
Prokaryotic type
ribosomal protein modification factors
GWR55_09085 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Fe_hyd_lg_C
Motif
Other DBs
NCBI-ProteinID:
QHS51874
UniProt:
A0A6B9YR23
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All DBs
Position
2192343..2194094
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AA seq
583 aa
AA seq
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MSLPVTSDSQTTAPDEASRPKIGFVSLGCPKNLVDSEVMMGLLHSAGGELITSAEDAEIL
VVNTCSFIDSAKQESVNTILEMVQHKQANGGRAQRLIVAGCLVERYRDEIRKNIPEVDAV
VGTGELEQILNAAGLAPKPAPSSSPLFNILPPDQNSPALVSRAASAVHQHSHPTEQGAQL
QLEHERESGNKKSVIPSEGEAGVEGSVAEGSAASGATKPGAPHLDSEMWASQDAKPSRPE
GDLREQQGRFSRTAWDGATAALPEYLYSDETPRILATPRASAYIKIAEGCDHPCSFCIIP
QLRGKFRSRRMSSIVAETEKLIAQGVREITLIGQDTTCYGEDLGLTDGLAQLLEALAVLP
GLKWLRFLYTYPNKVTTRLLETMAKHDNIAKYLDVPLQHASASVLKRMKRGGNAKIFLDL
IEKARRIVPGIVIRTSFIVGFPGETEEDYKELEAFIKAARIDWLGVFTYSDEEGAKAFEL
DAALKVPERTIQARRRKLMKLQQKISAKSKAEWVGREVDLLVEGESEETELLWEGRTIQH
APEIDGKVFINDFGPHEELVPGTFYRAEITESHDYDVVARILE
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
gtgagtctcccagtaacaagcgattcccaaacgactgcgcctgacgaagcttcgcggccg
aagatcggttttgtctccctgggctgccccaaaaatctggtcgactccgaagtcatgatg
ggtctgctgcactccgccggtggcgagttgatcaccagcgcggaagacgccgagatcctc
gtcgtcaacacctgcagcttcatcgactcggccaagcaggaatcggtaaataccatcctc
gagatggtgcagcacaagcaggcgaacggcggccgtgcgcagcgccttatcgtcgccggc
tgcctggtcgagcgctaccgcgacgagattcggaagaacatccccgaggtcgacgccgtc
gtcggaaccggcgagctggagcagatcctcaacgcggccgggcttgctccgaaaccagcg
ccttcctcgagcccactcttcaacatccttccgccggatcagaactccccggcgctggtc
agtcgcgccgcaagcgccgtccaccagcactcgcaccccaccgaacagggagcgcagtta
cagcttgagcacgaaagagaatcagggaacaagaagagtgtcatcccgagcgaaggcgaa
gccggagtcgaaggatctgtggcagaaggatctgcggcatcgggagccacaaagccgggt
gccccacatctcgattctgagatgtgggcttcgcaggacgccaagccgtcacgccctgag
ggcgacctccgcgagcagcagggccgcttttcccgtaccgcatgggatggagccacagcc
gcgttgcctgagtatctctactccgatgagacgccgcgcatcctggcaacgccgcgcgcg
tctgcctacatcaagattgccgaaggctgcgatcacccgtgcagcttctgcatcatcccg
cagctgcgcggaaagttccgatcgcgccgcatgtcctccatcgtggccgagacagaaaag
ctcatcgcgcagggcgttcgcgaaattaccctcatcggccaggacacgacctgctacggc
gaggacctcggtctgaccgacggcctggcgcagttgctcgaagcactcgcggtcctgcca
ggcctgaagtggttgcgcttcctctacacctatcccaacaaggtgacgacgcggctgctt
gagacgatggcgaagcacgacaacatcgcgaagtacctcgatgtcccgctgcagcacgcc
agcgccagcgtcctcaagcgcatgaagcgtggcggcaacgcgaagatcttcctcgacctg
atcgaaaaggcgcgccgcatcgttcccgggatcgtcatccgcaccagcttcatcgtcggc
ttccccggcgagaccgaagaggactacaaggaactcgaggcattcatcaaggccgcacgc
atcgactggctcggagtcttcacctactccgacgaggagggcgcgaaggccttcgaactc
gacgccgccctcaaggtccctgagcgcaccatccaggcccgccgccgcaagctgatgaag
ctccagcagaagatcagcgcgaagtcgaaggccgaatgggtaggccgcgaagtcgacctc
ctcgtcgaaggcgaatccgaagagacagaactcctctgggagggccgcaccatccagcac
gccccggagatcgacggcaaggtcttcatcaacgacttcggcccgcatgaagaacttgtt
cccggaacgttctatcgggcagagatcaccgagtcgcacgactacgacgtcgttgcccgc
atcctcgagtag
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