Edaphobacter sp. 12200R-103: GWR55_09735
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Entry
GWR55_09735 CDS
T06408
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWR55_09735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eda03019
]
GWR55_09735
Enzymes [BR:
eda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GWR55_09735
Messenger RNA biogenesis [BR:
eda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWR55_09735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QHS53779
LinkDB
All DBs
Position
complement(2342115..2343668)
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AA seq
517 aa
AA seq
DB search
MRLRIVLHSPGTPHRLRPYLRIILTTILEVPQQLDSTTANNSSNSPVFTDFNISDALKKR
LTDAGFVTPTPVQAGAIPPALEGRDILATASTGTGKTLSFLVPMLERLDATSAPSTRGKR
SPIRALILLPTRELAMQVLESYYKLMPGMKHDAVLVCGGLSENTQLENLNRGPRLVVATP
GRLEDYLRRRQIDLSHVDMFVLDEVDRMLDMGFLPPIRRIVSAIPKGRQTMCYSATLDAN
IQEVVRDYVKNPVRIEIGTTSKPSDRVELRVYTVMQDQKLGLLNQMLQEEQGTFLVFSRT
KHGADRISRKLEKLGHDTNAIHGDRSQSQRSSALKGFATGKHRVLVATDVAARGIDISDI
AHVVNYDLPNASEDFVHRIGRTGRAGAKGVATTFVMPQERHDARKLERELKIKFEWREAD
KNLEKEERNKPVDLNSIVRSSGIVNQAASGLEALLALETRSWRGDANGQPGASANGGDNG
PRARRKGRRGPGGRPSGPSGRASSKARSGSRPNRGGR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttcgcatcgttctgcattctccaggcacaccgcatcgcttgcggccttactta
aggattattttgacgacaattttagaagtacctcagcagctggattcgactaccgcaaac
aattccagcaactcacccgtttttacagacttcaacatctcggacgcgctcaagaagcgc
ctgacagacgctggctttgtaaccccgacgccggttcaggctggagcgattcctccagcc
ctcgagggccgggacattctggcgacagcatcgactggaaccggtaagactctgagcttc
cttgttccgatgctggagcggctggacgccacgtccgccccgagcacacggggtaagcgc
agcccgatccgcgcgctgattctgctgcccacccgcgagcttgcaatgcaggtgcttgag
agctactacaagctgatgcccggcatgaagcacgacgccgtgctcgtctgcggtgggctc
tctgagaacacgcagcttgagaatctcaatcgtggcccaaggctggtggttgctactcct
ggccgtcttgaggactatcttcgccggcgccagatcgatctgtcgcatgtcgacatgttc
gtcctcgatgaggtcgatcgcatgctcgatatgggatttctgccgccgattcgccgcatt
gtctccgccattcccaagggaaggcagacgatgtgctactccgcgactctggatgccaac
atccaggaggtcgtgcgcgactacgtgaagaacccggttcgtattgagatcggcaccaca
tcgaagccgtcggatcgcgtggaactgcgcgtctatacggtgatgcaggaccagaagctt
ggcctgctcaaccagatgcttcaagaggagcagggaaccttcctggtcttctcgcgtacg
aagcacggtgctgaccgtatctcgcgcaagctcgaaaagcttgggcacgatacgaacgcg
attcacggagatcgctcgcaatcccagcgcagttctgctctgaagggctttgctaccgga
aagcaccgcgtgctggtggcgaccgacgttgcagcgcggggtatcgacatctctgacatt
gcgcatgtcgtcaactacgatctgccgaatgcgagtgaagacttcgtgcaccgcatcggc
cgtaccgggcgagcgggcgctaagggcgtggctacgacgtttgtcatgccgcaagagcgt
cacgacgcacgcaagctggagcgcgaattgaagatcaagttcgagtggcgcgaggccgac
aagaatcttgagaaagaggagcgcaacaagccggtagatctgaattccattgttagatcc
tcagggatcgtcaaccaggcagcttcaggcctcgaggcgttgttggcgcttgagacccgg
tcctggcgtggcgacgcaaacgggcagccaggcgcatccgcaaacggcggagacaacggc
cctcgtgcacgtcgcaagggacggagagggcctggcggaaggccaagtggcccgtcaggt
cgtgccagcagcaaggctcgctccggttcgcgtccgaatcgcggagggcgctaa
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