Edaphobacter sp. 12200R-103: GWR55_10085
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Entry
GWR55_10085 CDS
T06408
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
eda
Edaphobacter sp. 12200R-103
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eda03009
]
GWR55_10085 (rlmD)
Enzymes [BR:
eda01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GWR55_10085 (rlmD)
Ribosome biogenesis [BR:
eda03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GWR55_10085 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Motif
Other DBs
NCBI-ProteinID:
QHS52049
UniProt:
A0A6B9YQW9
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All DBs
Position
2418164..2419459
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AA seq
431 aa
AA seq
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MKLSIEKVVYSGAGLARRENATGAETVFVPFTLPGEVVEAEMGGSRGGITEATLTQILTA
SPNRIEARCIHFGVCGGCQYQHAAYEAQLELKRGILKETLKRAGLHDLPEIETCSAQPWE
YRNRIRLRVDRVDSRLRAGYVRRNSGEFLPIEMCPIAAPVLWRAAQALLECLDAFPQWAT
AIREVEFFATGNERKLQITLIVAAQPAKNFEALCAAVQEKTPELAGAGVQILQGSTGTRK
AQRTKTGAEWGAEGLSYKVDEESYWVGRGNFFQVNRSLVTQLVRLATEGRGGRLAWDLYA
GVGLFSRVLARNFDEVVAVEAQKGSLEANLRGPGKRAAAATTADFLRQAALERDRPELIV
MDPPRAGVGAEVCSLLARVKAPELVYISCDPVTLGRDLRMMVDSGYKVNQLHLVDMFPQT
FHQETVAVLGR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttcaattgagaaggtcgtttacagcggagcaggattggcccggcgggagaat
gcaaccggagccgagactgtctttgtgccgtttacgctgcccggcgaagtggttgaggcg
gagatgggcgggagcagaggcggcattacagaagccaccctcacacagattctgacggct
tcgccaaatcgaattgaggctcgatgcattcactttggcgtgtgtggtgggtgccagtat
cagcacgctgcttatgaagcacagcttgaactgaagcgcggcattctgaaggagacgctc
aagcgagcaggactgcatgatctgccggagatagagacctgctccgctcagccgtgggag
tacagaaatcgcatacggttgcgcgtagacagggtggatagccgactgcgggcgggatac
gtcaggcgtaactcgggggagtttctgccgatcgagatgtgcccgatcgccgcgcctgtg
ctgtggcgcgcggcgcaggcgctgctggaatgtctggatgcgtttccgcaatgggctacg
gcaattcgggaggtggagttcttcgcgaccggcaatgagcggaagctccagataactcta
attgtcgcagcacagcctgcgaagaacttcgaggcgttgtgcgcagccgtccaggagaaa
acgccggaactggctggagcaggagtgcaaatactgcaaggctcaaccggtacgcgcaag
gcgcagcgcaccaaaacaggagcagagtggggtgcggagggtctttcttacaaagtggac
gaagagagctactgggtgggccggggaaacttcttccaggtcaatcgatctctggtcacg
caactggtacggctggcgactgaagggcgaggcggcagactggcgtgggatctttatgcg
ggcgtgggcctgttttcgcgggtgctcgccagaaacttcgacgaggtcgttgcggtggag
gctcagaagggcagcctggaagcaaaccttcgcggaccgggaaagagagctgccgctgcg
accacggcagattttctgcgacaggctgcgctggagcgcgaccgccccgagctgattgtg
atggatccgccgcgcgcaggcgttggggcggaggtatgcagcctgcttgcccgcgtgaag
gctccggaactggtgtacatctcgtgcgatcctgtgacgctcggacgcgacctgcgcatg
atggtagactccggctacaaggtaaaccagctgcatctggtcgacatgtttccgcagacc
tttcaccaggagacggttgcggttctcgggcgttga
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