Edaphobacter sp. 12200R-103: GWR55_15475
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Entry
GWR55_15475 CDS
T06408
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda00521
Streptomycin biosynthesis
eda00523
Polyketide sugar unit biosynthesis
eda00525
Acarbose and validamycin biosynthesis
eda00541
Biosynthesis of various nucleotide sugars
eda01055
Biosynthesis of vancomycin group antibiotics
eda01100
Metabolic pathways
eda01110
Biosynthesis of secondary metabolites
eda01250
Biosynthesis of nucleotide sugars
Module
eda_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
GWR55_15475 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
GWR55_15475 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
GWR55_15475 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
GWR55_15475 (rfbB)
00525 Acarbose and validamycin biosynthesis
GWR55_15475 (rfbB)
Enzymes [BR:
eda01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
GWR55_15475 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
adh_short
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
QHS52967
UniProt:
A0A6B9YTH8
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All DBs
Position
3724615..3725751
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AA seq
378 aa
AA seq
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MSAEQKRKRTPNGSSSPILVTGGAGFIGSNFVLEWFAAGNGPVINLDKLTYAGNPENLAS
IANLPGYTFVRGDICDAEMLKNLLERYRPRAIVHFAAESHVDRSILGPEAFLRTNIDGTF
TLLRAAKVYLESLDENDRADFRFLHVSTDEVYGTLAPEDPAFHEQTPYAPNSPYAASKAA
SDHLVRAWVHTYNLPAIITNCSNNYGPYQFPEKLIPLMIANARRGKPLPVYGDGQQVRDW
LYVADHCRALMSVLERGRIGETYNVGGCNQRTNLEVVTTLCTLLDELLPESEFRPHKQLL
TYVADRPGHDRRYAINAEKLQRELDWSPQESFETGLRKTVEWYLANTEWVDRITSGAYQH
WVEQNYGSREAVSARSAQ
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagaacagaagcggaagagaacgccgaacggaagttcgagccccatccttgtt
actggaggagctggttttattggctccaacttcgtcctcgaatggtttgcggccggcaat
ggcccggtcatcaatctcgataagctgacctatgcgggtaatccggagaacctggcatcc
atcgccaatctcccaggctatacctttgttcgcggtgacatctgcgacgcggagatgttg
aaaaatctgctggagcgctatcgcccccgcgccatcgttcactttgcggcggaaagtcat
gtcgatcgttcgatcctggggccggaagcctttcttcgcactaatattgatggcaccttc
actttgctgcgtgcggcaaaggtttacctggagtcattggatgaaaacgatcgcgccgac
ttccgttttcttcacgtgtcgaccgatgaggtatacggcacattggcgccggaagacccc
gcctttcatgaacagacgccctacgcgccgaactcgccctatgcagcatcgaaggcggcc
agcgatcaccttgttcgcgcctgggttcacacctacaacctgccggctatcatcaccaac
tgctccaataactatggaccgtatcagtttcccgaaaagctgattcccttaatgatcgcg
aacgctcgcagaggcaaaccccttcctgtgtatggcgacggtcagcaggtacgtgactgg
ttgtatgtggctgatcactgtagggcgctgatgtccgtgcttgaacggggacgcatcggc
gagacgtataacgtcggcggctgtaatcaacggacgaacctggaagtagtaacgacgctc
tgcaccctgctggacgagctgttgccggaatcagagttccgtccccacaagcagcttttg
acttacgtcgcggatcggccaggacatgaccgtcgttatgccatcaatgccgaaaagctg
caacgcgagctggattggagcccccaggagagctttgagacggggctgcgaaagacggtg
gagtggtacctggcgaatacggagtgggtcgatcgcatcaccagcggagcgtatcaacac
tgggtcgagcagaactatggttcgcgcgaggcggtctctgcgaggagtgcgcaatga
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