Enterococcus devriesei: AAEO79_02825
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Entry
AAEO79_02825 CDS
T10952
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ede Enterococcus devriesei
Pathway
ede03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ede00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAEO79_02825 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ede03019
]
AAEO79_02825 (rnr)
03016 Transfer RNA biogenesis [BR:
ede03016
]
AAEO79_02825 (rnr)
Enzymes [BR:
ede01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AAEO79_02825 (rnr)
Messenger RNA biogenesis [BR:
ede03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAEO79_02825 (rnr)
Transfer RNA biogenesis [BR:
ede03016
]
Prokaryotic type
tRNA degradation factors
AAEO79_02825 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
RNase_II_C_S1
HVO_A0114
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XHM44547
LinkDB
All DBs
Position
574363..576741
Genome browser
AA seq
792 aa
AA seq
DB search
MEKKTIKAEILAGLKAATKKSLSMEELAEALDMRKSEDYKLLVQTVAQMEREKTLEFNKK
GRIKLPFQPIEVEGIFRRNERGFGFVTIDPEEPDVFIPKDATNFAMDGDIVMIDIQKTAD
LFADRGAEGQVVSIKERKVQQLVGEFTAFDVDEIAESDLFGYVTPKDKKSAQFKVFITAE
GIQPVDGSVVIVEITHYPEKGYATSLEGLVTKVIGHKNDPGMDILSIVIAQGIPTQFPEE
VQTASEQVPDQISESDLVGRRDLREQQIVTIDGADAKDLDDAVTVRKLDNGNYFLGVHIA
DVSYYVTEDSILNKEAFERGTSVYLTDRVIPMIPQRLSNGICSLNPQVPRLTMSCEMEID
PSGTIVQHEIFQSVIQTTERMTYSAVNEILEEEKPATLERYQQLVPMFQLMKELHQILEA
RRIQRGAINFEDREAKILVDPEGRPMDIELRERGVGERLIESFMLAANETVAEHFNRLKL
PFIYRIHEQPKEEKMQRFFDFASALGILVKGTKNTITPKDLQKVIDEVEDKPEAPVINTM
LLRSMQQARYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRTYSQDQGEATKAKWA
EALPEIADHSSKMERRAVDAEREVDSMKKAEYMADKVGEEFDGIISSVTKFGIFIELPNT
VEGMIHLNELKQDYFHFIENQLALVGERTRQTFKIGQKVRVKVTKSDPETREIDFELLEA
EEIPALEVPGNNRRNNQRRKPSGGRKNNQNTNKNHPKNSDRPAAGKEKKKKKGKKPFYKS
VAKKKKPGRKKG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaaaacaattaaagcagaaatactggctggattgaaagcggccactaaaaaa
agtctttcaatggaagaattggcagaagcattagacatgcgtaaaagtgaggactacaag
ctattggttcaaacggttgcgcaaatggagcgggaaaagaccttagagtttaataaaaag
ggtcgcatcaagctgcctttccaaccaatcgaagttgaaggaatctttcgtcgtaacgaa
cgaggcttcggttttgtaacgatcgatccggaagaaccagatgtgttcattccgaaggat
gcgacgaattttgcaatggatggcgatatcgttatgattgatattcaaaaaacagcggat
ctgtttgctgatcgtggggcagaaggccaagtcgtttccatcaaagaacggaaagtccaa
caattggttggtgagttcactgcctttgatgtggatgagatcgcagaatcggatttgttt
ggctacgtaacaccaaaggataaaaaaagtgcgcagtttaaagtatttatcacagctgaa
gggattcaaccggtggacggcagtgtcgttatcgttgagatcacccattatccggaaaaa
ggctatgcaaccagtcttgagggattggtgacaaaagtcatcggtcataaaaatgatcca
gggatggatattttatcgatcgtgattgcccaagggattccgacacaatttcctgaagaa
gtccagaccgcatcagagcaagtgccggatcaaatttcagagtcggatctagttggtcgc
agagatctgcgggagcaacagatcgtgacaatcgatggtgctgatgcgaaagacttagat
gatgcggtgactgttcgtaaactagacaatggtaattattttttaggtgttcatatcgcc
gacgtttcctattatgtgacagaagacagcatcttaaataaagaagcctttgaacgagga
accagcgtttatttaaccgatcgggtaattccaatgattcctcagcgtttatcaaatggg
atctgttcattgaacccgcaggtgccacgcttaacgatgagttgtgagatggagatcgat
ccaagtggaacgattgttcagcatgaaatcttccaaagtgtcattcaaacgactgagcga
atgacttattcggcagtcaatgagattttggaagaggaaaagccagcaacgttagaacgt
tatcaacagttagtaccgatgtttcaactaatgaaagaactgcatcagatccttgaagcc
cgtcgtatccagcgtggagcaatcaattttgaggatcgtgaagcaaaaattttagttgat
ccagagggccgtccaatggatattgagttgagggaacgaggagtcggtgaacgattgatc
gaatcctttatgctagccgccaacgaaacggttgcggagcattttaatcgcttgaagttg
ccttttatctatcgaatccacgaacagccgaaggaagaaaaaatgcagcgtttctttgat
tttgcgtctgccttgggtattttagttaaagggacaaaaaataccattacgccgaaagat
ttacaaaaggttattgacgaggtagaagacaaaccggaagcaccagtcatcaatacgatg
ctcttacgaagtatgcaacaggcacgctattctgaagacaactatggtcattatggctta
gctgctgaatattatacgcactttacgtcgccgattcgtcgttaccctgatttgattgtt
catcgtctgattcggacctatagtcaggatcaaggggaagcgacaaaagccaagtgggca
gaggcgctgcctgaaatcgctgatcatagttcgaagatggagcgtcgtgcagtagatgct
gaacgtgaagtggacagtatgaaaaaagcagagtatatggcagataaagtcggtgaagag
tttgatgggattatcagctctgttacaaagttcgggatctttatcgaactgccgaatacg
gttgaaggtatgatccatctcaatgaattaaaacaagattatttccactttattgaaaat
caattagctttagtcggtgaacggacacgccaaacctttaaaatagggcaaaaggtgcga
gtaaaggtcacgaaatctgatcctgaaacacgggaaattgattttgagctgcttgaagcc
gaagaaattcccgcactggaggttccaggaaacaatcgtcgcaacaatcagcgccgcaag
ccatccggtggacgcaagaataatcaaaataccaataaaaatcatccgaaaaattcagat
cgtcccgctgcgggaaaagagaagaaaaagaaaaaaggcaagaagcctttttacaaatcg
gtggccaaaaagaaaaaaccaggtagaaagaagggatag
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