Enterococcus devriesei: AAEO79_11655
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Entry
AAEO79_11655 CDS
T10952
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ede Enterococcus devriesei
Pathway
ede03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ede00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAEO79_11655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ede03400
]
AAEO79_11655 (mfd)
Enzymes [BR:
ede01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAEO79_11655 (mfd)
DNA repair and recombination proteins [BR:
ede03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAEO79_11655 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
AAA_22
TFC3_eWH
Motif
Other DBs
NCBI-ProteinID:
XHM43679
LinkDB
All DBs
Position
complement(2412193..2415705)
Genome browser
AA seq
1170 aa
AA seq
DB search
MNVIEFINQMPLVKEWQAYLKKKAKRQLLIGLSGSAKALVMAAAQKQSNEQTVVVVPNLY
YSNQLAEELRQITEDVHLFPVDEVLSAEMAFASPEARAERVSTLRALSQGEQGIFVVPAA
ALRKYLPTPKTWRANQLHWRVGSEIDLDQLAQRLVLMGYERQTMVGKPGEFSMRGSIVDV
YPLTTEYPIRIELFDVEVDSLRYFEADTQRSVETLEEVWITPTTDLVFSAEDLTQGAAKV
NQLLQNRLAVTKEKEDYNFLNDYFGQLIASWEDGIPTEDAKYYTDLLYEEKVSLLDYLDQ
EALLFVDDYPRMMETYREMEREEAEWHTQKIEEMRVFSEQTFGLNLHELIKNTKLTTSFF
SLFQKGMGNLRFEAIHNFQYRSMQQFFGQMPLLKTEVDRWQKQGQTILFLVSDQERQAKL
TQEFHDVGIQAVQTTPEKLLIGQAQIMTGNLTSGFELPQDKLVVVTEREIFQKVTKKRAR
RQTISNAERLKSYNELKTGDYVVHANHGIGKYIGMETIEIDGVHQDYMSILYQKDDKLFI
PVTQLNLIQKYVSSEAKPPKINKLGGSEWTKTKSKVSKRIEDIADDLIELYAKREAERGY
AFGPDDEYQKEFEDAFPYSETDDQLRSTAEIKHDMEKNRPMDRLLVGDVGFGKTEVALRA
AFKAIKENKQVAFLVPTTILAQQHFDTMTERFENFPVNVAMLSRFRTKKQQNETIEQLRT
GQVDIVVGTHRLLSQDLKFSDLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPENRYPIQTYVMETNPGAIREAIERELARGGQAFYLYNRVET
IERKVEELQMLVPDAKIGFAHGQMTEVQLENTLMDFIDGQYDILVTTTIIETGVDIPNVN
TLFVENADYMGLSTLYQLRGRVGRSNRIAYAYFMYEPQKILNEVSEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVERKQGKNTQIERTSVEIN
LGIDAYIPGTYIEDERQKIEIYKRIRELESTEMLDEVESDLVDRFGDYPDEVANLLNVGQ
IKMDGDRALVESIQKRQQQIIVTLSKVGTKAYQVEQLFEALSATKMKATLGVEKDKMVIK
LMIDKKMDEAVWLREISLFIKALREQKYKE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtgatcgaatttataaatcagatgccattagtaaaagaatggcaagcgtattta
aagaaaaaagccaagcgtcaattattgatcgggctttcgggatcggctaaagccttggtc
atggcagcggctcaaaaacaaagcaatgagcaaacagtcgtggtagtaccgaatctctac
tatagtaatcagctagcggaagaattgcgacagattactgaagatgttcatttatttccg
gtagacgaggtactgtcggctgaaatggcctttgcttctccagaggcacgtgccgaacgg
gtttctaccttgcgggcgctatcacaaggcgagcaagggatttttgtcgtgccagcagca
gcgctacgaaaatatttaccgacacctaaaacatggcgggccaatcagctccactggcga
gtcggcagtgagattgatctagatcagcttgcacaacggttagtcttaatgggctacgag
cggcaaacaatggtaggtaaaccaggtgaattcagtatgcggggcagtattgtcgacgtc
tatccgttaacgactgaatatccaattcgaatcgagctgtttgacgtggaagtcgattcg
ttacggtatttcgaagccgatacgcagcgatcagtggaaaccttggaagaagtctggatc
acgccgacgacggatctggttttttctgccgaagatttgacccaaggtgcggctaaggtg
aaccagctgctgcaaaaccgtttagcggtgacgaaagaaaaagaagactataattttttg
aatgattattttggtcagttgattgcttcttgggaagatggtattccaacagaagatgcg
aaatattataccgatcttttatatgaagaaaaagtttcattgttggattatttagatcaa
gaggcgttgctgtttgtcgatgactatccgcgaatgatggaaacgtatcgagaaatggaa
cgagaagaagcggaatggcatacgcaaaaaattgaagaaatgcgagttttttcggaacaa
acttttggtttgaatctccatgagctgattaaaaacactaagttaactaccagttttttt
tcattattccaaaaaggaatgggcaatctgcgcttcgaggcgatccacaattttcaatat
cgttcgatgcagcaattttttggccaaatgcctttactaaaaaccgaagttgatcgctgg
caaaaacaaggtcaaacgattctatttctcgtttcggaccaagaacgacaagcgaaattg
acgcaagaatttcatgatgtgggcattcaagcggttcaaacgacaccagaaaagttgttg
atcggtcaggctcaaatcatgacgggaaatttaacctcaggttttgaattgccgcaagat
aagctggtcgtggtgacggaacgagagattttccaaaaggtcacgaaaaagcgagcgcgg
cgtcaaacaatctcgaatgcggagcggctaaaaagttacaatgagttgaagactggggat
tatgtcgtccatgccaatcacgggatcgggaaatatatcgggatggaaacgattgagatc
gatggcgtccatcaagattacatgtcgatcttgtaccaaaaggacgataagctgtttatc
ccagttacccagctgaatctgattcaaaaatacgtttcttccgaagcgaagccgccgaag
atcaataaattaggcggcagcgaatggaccaagacgaagagtaaggtctcgaaacgaatc
gaagacatcgcggatgacttgattgagctttatgccaagcgggaagccgaacgaggctat
gcttttggtcctgatgacgaataccaaaaagaatttgaagatgcctttccttatagtgag
acggacgatcaactgcggagtaccgcggagatcaagcatgatatggaaaaaaatcggccg
atggatcgtttgttagttggagatgtgggctttgggaaaaccgaagttgccttacgtgct
gcctttaaagcaatcaaagaaaacaaacaagtggcctttttagtaccaacgacgattttg
gctcagcaacattttgatacgatgacggaacggtttgaaaatttccctgtcaatgtggcg
atgctgagccgtttccggacaaaaaaacagcaaaatgaaaccattgaacaattgcggacc
ggtcaagttgatattgtagtggggacccatcgcctgctctcacaagatttaaaattttct
gatcttggcctattagtgattgacgaagagcagcgttttggggtaaaacacaaggaacga
ttgaaacaattacgctcgcaagtcgacgtcttgactttgacggcaacacctattccacgg
acgctgcatatgtcaatgttaggcgtacgggatttatcagtcattgagacgccgccggaa
aaccgttacccgatccaaacttatgtgatggaaaccaatccgggggcgatcagagaagcg
atcgagcgagaattggctcgtggcgggcaggcattttatctctataatcgcgtagagacc
atcgaacgaaaagttgaagagttacaaatgctagtacccgatgccaaaatcggttttgct
catggacagatgacggaagttcaattggaaaataccttgatggatttcatcgacggccag
tatgacattttagtcacgaccacgatcatcgagaccggtgtggacattccgaatgtgaat
accttgtttgtcgaaaacgccgattatatgggattatccaccttgtatcaattgagagga
cgggtaggccgcagcaatcggatcgcttatgcttatttcatgtatgagccgcaaaagatt
ttaaacgaagtcagtgaaaaacgattgcaggcaatcaaagactttactgagcttggctcc
ggctttaagatcgcgatgcgagatttgtcgattcgtggtgcaggtaatctattaggtgcc
caacagcatggctttattgatgcggtaggatttgatatgtattcacaaatgctctctgaa
gcggtggaacgtaagcaagggaaaaatactcagatcgaacggacttcggtggaaatcaat
ttagggattgacgcctacataccggggacttatatcgaagacgaacggcaaaaaatcgag
atttacaaacgcattcgcgaattggagagcacggagatgttggatgaagtcgagtctgac
cttgtggatcgttttggtgattatccagacgaagtggcgaatttattaaacgttggtcag
attaaaatggatggcgatcgtgccttagtcgagagcatccaaaaacgtcaacaacaaatc
attgtgacgctaagcaaagtaggtaccaaggcctatcaagtcgagcagttgtttgaagcc
ttgagtgccactaagatgaaagccacgctaggcgtggaaaaagataaaatggtcatcaag
ttgatgatcgacaaaaaaatggatgaggctgtttggctgcgagaaattagtttgtttatc
aaagccttacgggaacaaaagtataaagagtag
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