Edaphobacter albus: H7846_00775
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Entry
H7846_00775 CDS
T08591
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
edg
Edaphobacter albus
Pathway
edg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
edg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H7846_00775 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
edg03021
]
H7846_00775 (rpoD)
Transcription machinery [BR:
edg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H7846_00775 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DUF4094
HTH_20
HTH_62
Put_DNA-bind_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QNI36909
LinkDB
All DBs
Position
complement(178734..180437)
Genome browser
AA seq
567 aa
AA seq
DB search
MAEELDKYEEDVDRIIETGKEKGYLTYGEVNDLLPGDITTPDDLDDLLTTINTQGIDVLS
GDKYDRDKYDSEMGEESEDVELDLSPGQLEKTNDPVRMYLREMGTVPLLTREGEVEIAKR
IERGQMRVMKAISRSPIVIREITALGEDLRRGVRNIKEVVTFDEEELTEEILQARVKQTV
GRIDVLLKHQKKIAQLEEKLAAPHGKDAKAKAKDVRKNRWLIGREHVFINRIVRELKYTN
AEKKRLLDKVNKTVDSMRTLERQIKTLESKHEASKSEELKKEYKRQQKNCRVDLERLEED
AGISLVDLKRTQREMIQGDMDAERAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQL
VQELGREASSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVS
PSDAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQI
EAKALRKLRHPSRSRKLKAFVDGVKEV
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagaactcgacaagtacgaagaagacgtagaccgcattattgagaccgggaag
gaaaagggctatctgacctacggcgaagtgaacgaccttctgccgggcgatattaccacc
cccgacgatctcgacgatctgctcaccaccattaacacccagggcatcgatgtgctctcg
ggagacaagtacgaccgcgacaagtacgactccgagatgggcgaagagtcggaagacgtc
gagctcgatctctcacccggtcagctggaaaagaccaacgaccctgtccgcatgtacctg
cgcgagatgggaaccgtcccgctgcttacccgcgagggcgaagtcgaaatcgccaagcgc
atcgagcgcggccagatgcgcgtgatgaaggccatctcgcgttcgccgattgtcattcgc
gagatcaccgccctcggcgaagatctccgccgcggcgtccgcaacatcaaggaagtcgtc
accttcgatgaagaagaacttaccgaagagattctgcaggcacgcgtcaagcagaccgtc
ggtcgcatcgatgtcctcctgaaacaccagaagaagatcgcgcagctcgaagaaaagctt
gccgctccgcatggcaaggacgccaaggccaaggcgaaggatgtgcgtaagaaccgctgg
ctcatcggccgcgagcacgtcttcatcaaccgtatcgtccgcgagctgaagtacaccaac
gccgagaagaagcgcctgctcgataaggtcaacaagaccgtcgactccatgcgcaccctc
gagcgccagatcaagaccctcgagagcaagcacgaagcctcgaagtctgaagagctcaag
aaggaatacaagcgccagcagaagaactgccgcgtcgacctcgagcgcctcgaagaggat
gcaggcatctcgctcgtcgatctcaagcgcactcagcgcgagatgatccagggcgacatg
gacgccgagcgcgccaagcgcgagctgatcgaagccaatcttcgcctcgtcgtctccatc
gcgaagaagtacaccaatcgcggtcttcagttcctcgacctgattcaggagggcaacatc
ggcctgatgaaggcggtcgacaagttcgagtaccgccgcggttacaaattctcgacctat
gccacctggtggatccggcaggccatcactcgagccatcgccgaccaggcccgcaccatc
cgtatcccggtgcacatgatcgagaccatcaacaagctcatccgcacctcgcgtcagctc
gtgcaagagcttggccgcgaagcctcgtcggaagagatcgcacgtcgcatggacatcccg
gtcgcgaaggtccgcaaggtcctcaagatcgcgcaagagcccatctcgctcgagaccccc
atcggagaagaggaagactcgcaccttggcgacttcatcgaagaccgcatggccgtctcg
cccagcgatgcggtcatcagcgtcaacctcaaggagtacacttcgcaggttctccgcacc
ctgacgccgcgcgaagagcgcgtcatcaagatgcgcttcggcctcgaggacggctccgaa
cacacgcttgaagaagtcggccagagcttccaggtcactcgcgagcgcatccgccagatc
gaagccaaggccctccgcaaactccgccaccccagccgatcccgcaagctgaaggcgttc
gtggatggcgtgaaggaagtctaa
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