Edaphobacter sp. 4G125: H7846_15500
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Entry
H7846_15500 CDS
T08591
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
edg
Edaphobacter sp. 4G125
Pathway
edg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7846_15500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edg03019
]
H7846_15500
Enzymes [BR:
edg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H7846_15500
Messenger RNA biogenesis [BR:
edg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H7846_15500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QNI38672
UniProt:
A0A7G8C1K2
LinkDB
All DBs
Position
complement(3699259..3700584)
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AA seq
441 aa
AA seq
DB search
MKERLTTAGFIRPTPVQAGAIPPALEGSDILATASTGTGKTLSFLVPILEKLDATSTPST
RGKRNAIRALILLPTRELAMQVLENYWKLMPVARHDAALICGGLSENAQFENLDRGPRVV
VATPGRLEDFLRRREIDLSRVEMFVLDEVDRMLDMGFLPAIRRIAAAVPRTRQTMCYSAT
LDANIQEVVRDYVKNPIRIEIGSTSKPSDRVELRVYTVMQDQKLSLLNQMLEEEEGSFLV
FSRTKHGADRISRKLQKLGHGSNAIHGDRSQSQRTSALKGFAGGKHRVLVATDVAARGID
ISGIAHVVNYDLPNASEDFVHRIGRTGRAGAKGVATTFVMPQEHHDARKLERELKIRFDW
READKNLAKEERNRPIDLNTLPAPSTNTGKASGLEALLALETRTWRNESAPMPSGKGRRS
GPRHKGRGRKPGTATARQGKR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
ctgaaagagcggctgaccactgccggttttatccggccaacgccggtacaggcgggggcg
attccacctgcgctcgaggggagcgatattcttgcaacagcttcaacaggaactgggaag
acgctcagttttctcgttcccattcttgagaagctcgatgctacttctacacccagtacg
cgcggcaagcgcaacgcgatccgcgcactgattcttctgccgacacgtgagcttgcgatg
caggtgctggagaactactggaaactgatgccagtggcgcgacacgatgcggcgctcatc
tgcggaggactttcggagaacgcccagtttgaaaatcttgaccgcggcccccgcgtggtg
gttgcaacgcctggcagactggaggattttctccgtcgccgcgagatcgatctctcacgc
gtggagatgtttgttctcgacgaggtggaccgcatgcttgacatggggttccttccagcg
attcgcaggattgctgctgcggtaccacgtacgcgccagacgatgtgctattcggccacg
ctggatgccaatatccaggaggtggtgcgtgattatgttaagaacccgattcgcattgaa
atcggctcaacttcaaagccatcggaccgcgtcgagttgcgcgtttacaccgtaatgcaa
gatcagaagctgagcctgctaaaccagatgcttgaggaagaggagggaagcttcctggtc
ttttcgcgcaccaagcatggggcagaccgtatctctcgcaagctgcagaagttgggccac
ggctccaatgcgattcatggcgaccgttcgcagtcgcaacgcacgtcggcactgaaaggc
tttgccgggggcaagcatagggttctggtcgctacggacgttgcggctcgcggcattgat
atttccggtattgcccacgtggtgaactacgatctcccgaatgccagcgaggattttgtt
caccgcattgggcgcactgggcgagcgggcgccaagggagttgcaactacctttgtgatg
ccgcaggagcaccatgatgccaggaaacttgagcgcgaactaaagatcaggttcgactgg
cgcgaggcagataagaacctcgcaaaagaggaacgaaacaggccaatcgatctgaatacg
ctgcctgcaccatcgaccaacacaggcaaggcttccggcctggaggcgttactggctctc
gagacacgcacttggcgaaatgagtcggcgccgatgccatcaggaaagggccgtcgttct
ggtcccagacacaaaggccgaggacgtaagccggggactgcaacagcccgtcaggggaag
cgataa
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