Escherichia coli DH1: EcDH1_0980
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Entry
EcDH1_0980 CDS
T01996
Name
(GenBank) Sigma 54 interacting domain protein
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
edh
Escherichia coli DH1
Brite
KEGG Orthology (KO) [BR:
edh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
edh03000
]
EcDH1_0980
Transcription factors [BR:
edh03000
]
Prokaryotic type
Helix-turn-helix
Other families
EcDH1_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
GAF_2
Mg_chelatase
MCM
AAA_5
AAA
GAF_3
AAA_16
AAA_19
AAA_2
AAA_22
HTH_8
AAA_30
DBD_HTH
DUF815
Motif
Other DBs
NCBI-ProteinID:
ACX38663
LinkDB
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Position
1051474..1052988
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AA seq
504 aa
AA seq
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MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLA
KDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFA
GQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFE
AVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLV
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
RVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRE
RGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARA
TRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWA
ACARMLETDVANLHRLAKRLGLKD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttccgttgatgtgctggcgaatatcgccatcgaattgcagcgtgggattggt
caccaggatcgttttcagcgcctgatcaccacgctacgtcaggtgctggagtgcgatgcg
tctgcgttgctacgttacgattcgcggcagtttattccgcttgccatcgacggtctggca
aaggatgtactcggtagacgctttgcgctggaagggcatccacggctggaagcgattgcc
cgcgccggggatgtggtgcgctttcccgcagacagcgaattgcccgatccctatgacggt
ttgattcctgggcaggagagtctgaaggttcacgcctgcgttggtctgccattgtttgcc
gggcaaaacctgatcggcgcactgacgctcgacgggatgcagcccgatcagttcgatgtt
ttcagcgacgaagagctacggctgattgctgcgctggcggcgggagcgttaagcaatgcg
ttgctgattgaacaactggaaagccagaatatgctgccaggcgatgccacgccgtttgaa
gcggtgaaacagacgcagatgattggcttgtcccctggcatgacgcaactgaaaaaagag
attgagattgtggcggcgtccgatctcaacgtcctgatcagcggtgagactggaaccggt
aaggagctggtggcgaaagcgattcatgaagcctcgccacgggcggtgaatccgctggtc
tatctcaactgtgctgcactgccggaaagtgtggcggaaagtgagttgttcgggcatgtg
aaaggagcgtttactggcgctatcagtaatcgcagcgggaagtttgaaatggcggataac
ggcacgctgtttctggatgagatcggcgagttgtcgttggcattgcaggccaagctgctg
agggtgttgcagtatggcgatattcagcgcgttggcgatgaccgttgtttgcgggtcgat
gtgcgcgtgctggcggcgactaaccgcgatttacgcgaagaggtgctggcagggcgattc
cgcgccgatttgtttcatcgcctgagcgtgtttccactttcggtgccgccgctgcgtgag
cggggcgatgatgtcattctgctggcggggtatttctgcgagcagtgtcgtttgcggcag
gggctctcccgcgtggtattaagtgccggagcgcgaaatttactgcaacactacagtttt
ccgggaaacgtgcgcgaactggaacatgctattcatcgggcggtagttctggcgagagcc
acccgcagcggcgatgaagtgattcttgaggcgcaacattttgcttttcctgaggtgacg
ttgccgacgccagaagtggcggcggtgcccgttgttaagcaaaacctgcgtgaagcgaca
gaagcgttccagcgtgaaactattcgtcaggcactggcacaaaatcatcacaactgggct
gcctgcgcgcggatgctggaaaccgacgtcgccaacctgcatcggctggcgaaacgtctg
ggattgaaggattaa
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