Escherichia coli DH1: EcDH1_2533
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Entry
EcDH1_2533 CDS
T01996
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
edh
Escherichia coli DH1
Pathway
edh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
edh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EcDH1_2533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
edh03400
]
EcDH1_2533
Enzymes [BR:
edh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EcDH1_2533
DNA repair and recombination proteins [BR:
edh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EcDH1_2533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACX40169
LinkDB
All DBs
Position
2705727..2709221
Genome browser
AA seq
1164 aa
AA seq
DB search
MPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccccatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaaccggc
gcagcctgtgcaacgctggtagcggaaattgccgaacgtcacgccggtccggtggtactc
attgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagccagtttaccgat
caaatggtgatgaatctggcggactgggaaactcttccctacgacagtttttcgcctcat
caggacattatctcctcgcgcctttccaccctttaccagctaccgacgatgcagcgtggc
gtactgattgttccggtgaatacgcttatgcagcgcgtttgcccacacagttttctccac
ggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggacagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagctgccttatcgtcttgatttc
tttgatgatgaaatcgacagcctgcgggtgtttgacgtcgacagccagcgcacgctggag
gaagtagaagcgatcaatctgctgcccgcgcacgaatttccgaccgataaagcggcaatt
gaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgatccagaacatatt
taccagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccattgttc
ttcagcgaaccactgccgccgctgttcagttatttccctgccaataccttgctcgtgaat
actggcgatctggaaaccagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgatccgatgcgcccgctgttgccaccacaatcgctctggctgcgggtg
gacgagctcttctcagagctgaaaaactggccccgggtgcagctaaaaactgaacattta
ccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagacctggccgttcag
gcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagactttcgacggtccg
gtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaactgctcgcacga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ctgatgattggcgctgccgaacatggttttgtcgatacggtgcgtaatctggcgctgatt
tgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggattctcgccgcacc
atcaaccccgatacactgatccgtaaccttgcggaactgcatattggtcagccggtggtc
catctggagcacggcgtcggtcgttatgccggaatgaccacgctggaagcgggtggcatt
actggcgagtatctgatgctcacctatgccaacgacgccaaactgtatgttccggtgtcg
tcactgcatctgattagccgttacgcaggtggcgcggaagaaaacgccccgctgcataaa
cttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaagtgcgtgatgtg
gcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaaaccacgccggat
caggcgcaggccattaatgcggtacttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgcagctttcctg
gcagtagataaccacaagcaggtggcggtgctggtgcctaccacccttctcgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgatctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgcattaaagcg
atgcgcgcgaacgtggatattctgacgcttactgcaacgccgatcccacgtacgctgaat
atggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagcatggtggtccgggaggcgatcctgcgt
gaaattttgcgcggaggacaggtttattatctctacaatgatgtggaaaacattcagaaa
gccgccgaacggctggcagaactggtgccagaagcgcggatcgccatcggtcacgggcag
atgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtacaaccattatcgaaaccgggatcgacatcccgacagccaacactattatc
attgaacgcgcggatcacttcggtctggcgcagctgcaccagttacgcggtcgcgtcgga
cgttcgcatcatcaggcatatgcatggttgctgacaccgcatccaaaagcgatgactacc
gatgcacaaaaacgtcttgaagcaattgcctcgctggaagatctcggggcaggttttgcg
ctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggcgaagaacaaagc
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcactgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gagctgcggatgccgtcgctattgccagatgatttcatccctgacgtgaacacgcgtctg
tcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctgccagatccggcgcgtaccctgctggatattgcc
cgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggggtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaatttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagag
aacgcgatcgcttaa
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