Escherichia coli DH1: EcDH1_4157
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Entry
EcDH1_4157 CDS
T01996
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
edh
Escherichia coli DH1
Pathway
edh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EcDH1_4157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edh03019
]
EcDH1_4157
03400 DNA repair and recombination proteins [BR:
edh03400
]
EcDH1_4157
Enzymes [BR:
edh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EcDH1_4157
Messenger RNA biogenesis [BR:
edh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EcDH1_4157
DNA repair and recombination proteins [BR:
edh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EcDH1_4157
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACX41757
LinkDB
All DBs
Position
complement(4506777..4508612)
Genome browser
AA seq
611 aa
AA seq
DB search
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL
IRAHVDGDDEE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaa
gaaacctttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctt
tccggccgcgattgcctcgtcgtcatgcccactggtggcggaaaatccctttgctatcaa
atccctgccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatg
aaagatcaggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacg
caaacccgcgaacagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgtctg
ctttatatcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactgg
aatccggtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttc
cgcccggaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatg
gcgctgaccgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctg
aacgatccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatg
gagaagttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtca
ggcattatctactgcaacagccgcgcgaaagtagaagacaccgctgcgcgcctgcaaagc
aagggaattagcgcggcggcctatcatgccgggctggaaaataatgttcgcgccgatgtg
caggaaaaattccagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatg
ggcatcaataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaa
tcctattatcaggaaaccggacgcgccgggcgtgatggcctgcccgcggaagcgatgctg
ttttacgatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcagggg
cagttgcaggatatcgagcgccacaaactcaatgcgatgggcgcgtttgccgaagcgcaa
acttgccgtcgtctggtattgctgaactattttggcgaagggcgtcaggagccgtgcggg
aactgcgatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagatt
gccctttccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtg
attcgtggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctat
ggcatgggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcac
ctcggcctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcg
cgcccggtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctc
aaaccgaaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaa
ttacgcaaactgcgtaaatcgatagccgatgaaagtaatgtcccgccgtacgtggtgttt
aacgacgcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctc
agcgttaacggcgttgggatgcgcaagctggaacgctttggcaaaccgtttatggcgctg
attcgtgcgcatgttgatggcgatgacgaagagtag
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