Entamoeba dispar: EDI_022970
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Entry
EDI_022970 CDS
T01083
Name
(RefSeq) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
edi
Entamoeba dispar
Brite
KEGG Orthology (KO) [BR:
edi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
edi03016
]
EDI_022970
Enzymes [BR:
edi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EDI_022970
Transfer RNA biogenesis [BR:
edi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EDI_022970
Prokaryotic type
tRNA splicing ligases
EDI_022970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
UDPG_MGDP_dh_C
FAM25
ExbD
Motif
Other DBs
NCBI-GeneID:
5880414
NCBI-ProteinID:
XP_001735457
UniProt:
B0EAV2
LinkDB
All DBs
AA seq
535 aa
AA seq
DB search
MAKSRYSRKNKGKKLQRVQENTVSTEEKSVPEVETIDFNGFQIPKVYDGKLERKPMELEI
KKGFVEGMNGDAKIFCNDDLFNLLTFEMIKDISNNYPSCVRQTANAATLPGVVASLAMPD
AHSGYGFSIGGVVAMRLDNSEAVICPGGVGFDINCGVRLIRTNLQREDIEQHKSRLADEL
FKQIPSGVGTKAQIAFSPEDFDSIMTEGLEFLVKNGYAWEEDLSHCEEHGKIANADPSLV
SKSAKSRGYKQVGTLGSGNHYLEVQVVDEIMDVEAAKAMGINEVGQVCIMVHCGSRGLGH
QVCQDYIDLCMKSGICNPIDKQLTGVPFNSPIGQQYYSAMNCCANFAFANRGMITYRIRQ
AFETVLRMKPKKMDMHLVYDVCHNIAKVEEHEVDNKKVQCIVHRKGATRAFPPQHPDISE
DYKEIGQPAIIGGSMGTCSYVLVGTQEGMKKSFGSTCHGAGRKMSRVKAMDNLTSKDVIN
RIKEMGIELRITDPKLAAEEADEAYKDVTEVVETCQAAGISKIVLRLKPLIVIKG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaagtagatactcaagaaagaacaaaggaaaaaagttgcaaagagttcaggaa
aacactgtctctactgaagagaaatctgtaccagaagttgagacaattgactttaatggc
ttccaaattcctaaagtttatgatggaaagttggaaagaaaaccaatggaattagaaatt
aaaaaaggatttgtagaaggaatgaatggagatgccaaaatcttttgcaatgatgacttg
tttaatttattaacttttgaaatgattaaagacatttctaataattacccttcttgtgta
agacaaacagctaatgcagctactcttccaggagtagttgcttcacttgctatgccagac
gcacatagtggttatgggttttctattggaggagtagtagcaatgagacttgataattct
gaagcagtaatttgtcctggaggagttggatttgatatcaattgtggtgtaagattgata
agaacaaatttacaaagagaggatatagaacaacacaaatctcgtttagctgatgaactg
tttaaacaaattccaagtggagttggaacaaaagcacaaattgcctttagccctgaagac
tttgattctattatgacagaaggattagaatttttagttaaaaatggatatgcctgggaa
gaagatttaagtcattgtgaagagcatggaaaaattgctaacgctgatccatcgttagtt
tctaaatcagctaagtctcgtggatataaacaagtaggaacactaggaagtggaaatcat
tatttagaagttcaagttgttgatgaaattatggatgtggaggcagctaaagcaatgggt
attaatgaagttggacaagtttgtattatggttcattgtggaagcagaggattaggacat
caagtatgtcaagattacattgatttatgtatgaaatctggaatttgtaatccaattgat
aaacaattaactggtgttccatttaattcaccaataggccaacaatattatagtgctatg
aattgttgtgctaattttgcatttgcaaataggggaatgattacttatagaatccgtcaa
gcatttgaaacagttcttagaatgaaaccaaaaaaaatggacatgcatttggtttatgac
gtttgtcataacattgctaaggtagaagaacatgaagtagataataaaaaagttcaatgt
attgttcatagaaaaggtgctactcgtgcttttccacctcaacaccctgatatttcagaa
gattataaggaaattggacaaccagcaattattggtggaagcatgggaacttgttcttat
gtattagttggaactcaagaaggaatgaaaaaatcatttggttcaacttgtcatggagca
ggtcgtaaaatgagtagagtaaaagctatggacaatttaacttcaaaggatgtaattaac
agaataaaagaaatgggaattgagttgagaattactgacccaaaacttgccgcagaagaa
gcagatgaagcgtacaaagatgttactgaagttgtagaaacttgtcaagcagcaggtatt
tcgaagattgttcttcgtttaaaaccattaatagttataaaaggttag
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