Entamoeba dispar: EDI_115040
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Entry
EDI_115040 CDS
T01083
Name
(RefSeq) spliceosome RNA helicase Bat1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
edi
Entamoeba dispar
Pathway
edi03013
Nucleocytoplasmic transport
edi03015
mRNA surveillance pathway
edi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
edi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EDI_115040
09122 Translation
03013 Nucleocytoplasmic transport
EDI_115040
03015 mRNA surveillance pathway
EDI_115040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edi03019
]
EDI_115040
03041 Spliceosome [BR:
edi03041
]
EDI_115040
Enzymes [BR:
edi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EDI_115040
Messenger RNA biogenesis [BR:
edi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EDI_115040
Spliceosome [BR:
edi03041
]
Complex C
Other components
EJC/TREX
EDI_115040
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EDI_115040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
5886118
NCBI-ProteinID:
XP_001740939
UniProt:
B0EJF6
LinkDB
All DBs
AA seq
419 aa
AA seq
DB search
MTDPTNQIPDYVPTTETKMDIEPANKDNYVGTVAFSNMNLKKEILMAITDCGFEHPSEVQ
SQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRELALQAQKE
FDRMKKRLCEATGKEIPTGTFVGGVEEKKDIEFIKTHKPTIVIGTPGRIASLVRQKALDL
SKLDTFVIDECDKVLGSTSEIEIGEIFISSPKEKQVMMFSATISETNKGICRKYLKNQLE
VFIDDGEKLFLHGLHLYFKKLGDNDKKKTFMDIIDYIDFNQAIVFAENSERCRVLVKKLK
QIGYPCGILYGRMDQEIREKEYQRFRDGESRVLVSTDLCGRGIDVAKVNLVVNFDMPNDS
DQFLHRVGRAGRFGTKGVAISFIDTEEDDKVLKEVQSRFAVQMDELPSSLKDIPTSYYK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccaactaatcaaattccagattatgttccaactactgaaactaaaatggac
attgaaccagcaaataaagataattatgtaggaacagttgcattcagtaacatgaatctc
aaaaaagaaatattaatggctattactgattgtggatttgaacacccatctgaagttcaa
tcacaagttattcctaaagcattattaaaacaagacattttatgtcaagctaaatctgga
atgggtaaaacagctgtatttgtcatttcaattttaaatcaaggactttgtcttggagat
tatgtatcagcattagttatttgtcatactcgtgaacttgcattacaagcacaaaaagaa
tttgatagaatgaaaaaaagactttgtgaagcaacaggaaaagaaattccaacaggtaca
tttgttggaggtgttgaagaaaaaaaagatattgaatttattaaaacacataaaccaact
attgtaattggtacaccaggtagaattgcatctcttgttagacaaaaagcattagattta
agtaaacttgatacatttgttattgatgaatgtgataaggttcttggatcaacaagtgaa
attgaaattggagaaatatttatttcatcaccaaaagaaaaacaagtgatgatgttttca
gctactatttcagaaacaaataaaggtatttgtagaaagtatttaaaaaatcaattagaa
gtgtttattgatgatggagaaaaattattccttcatggtcttcatttatactttaaaaaa
ttaggagataatgataaaaagaaaacatttatggatattatcgattatattgatttcaat
caagcaattgtttttgctgaaaatagtgagagatgtcgtgttcttgttaagaaattaaaa
caaattggatatccatgtggtattttatatggtagaatggatcaagaaataagagaaaaa
gaatatcaacgatttagagatggagagagtagagttttagtttctactgatttatgtgga
agaggaattgatgtagctaaagtaaatcttgttgttaactttgatatgcctaatgattct
gatcaatttttacacagagtaggaagagctggaagatttggaactaaaggagttgctatt
tcatttattgatactgaagaagatgataaagttttgaaagaagtccaatcaagatttgct
gttcaaatggatgaattaccaagttcattgaaggatattcccacaagttactacaaataa
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