Entamoeba dispar: EDI_156120
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Entry
EDI_156120 CDS
T01083
Name
(RefSeq) nonsense-mediated mRNA decay protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
edi
Entamoeba dispar
Pathway
edi03013
Nucleocytoplasmic transport
edi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
edi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EDI_156120
03015 mRNA surveillance pathway
EDI_156120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edi03019
]
EDI_156120
Enzymes [BR:
edi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EDI_156120
5.6.2.5 RNA 5'-3' helicase
EDI_156120
Messenger RNA biogenesis [BR:
edi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
EDI_156120
mRNA cycle factors
Common to processing body (P body) and stress granule
EDI_156120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
AAA_30
AAA_19
ResIII
DEAD
NPHP3_N
SLFN-g3_helicase
PhoH
nSTAND3
SRP54
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
5881993
NCBI-ProteinID:
XP_001736978
UniProt:
B0EFD7
LinkDB
All DBs
AA seq
937 aa
AA seq
DB search
MSNTTKDKVRCWYCGLADKKKLIRCGCGKYFCNGTGDGKVSHIIHHVSSLKHKDLKYSDE
YIQCNLCKTRNPFVLGFLQVKQNSDMTTCLCRTCRYNTTIQNLGWDVDTWTSIVCEGKFV
NEVCPQPSNEEMNIVQSISYQKMRKMAWELQNNRKKFEEETETFEELHPIYLNYHDCKQY
YHTYYPLIRLEAEADRQKRESEHLTNMTLTFDGTRTEKDIKKIVHVSFQVPLNEEISITI
NDTLFFYVPMKNKSIEVNEIHNYGEFNEQEKKEFLGKINTFLVGSVQSIKGKDVTVLLSR
QADIPIEKQIVTPQNQQFKYSICFHWLSIPFRRKRMALLDFCRTEVEPIAASMSKYLRDR
LLGMPITEIDRQMEQQFKEEKEMYLSRHPTEASLSAPNLPPLNQVQFDVVRKSFTKQLSL
IQGPPGTGKTVTSATIVYHVVQSNPGKKVLVCAPSNIAVDQLGIKIIETGVKVIRVYSKS
RELAEESLHDYSLKTLMIEQLKKDKEMFLLYQDYKDDPDSLDIVNKTAIQKRINEIELAL
LRETDVICCTCCGALDNRLNGILEHIDTVLIDESTQADEPECLICLNNSVKQLFLVGDHC
QLGPILNSSRAKKNGLGLPMFSRLLQLGHEPYRLQFQYRMHPCLSEFSSQTFYDGVLQNG
VTALERQFPSLKYFWFKQNKPMMFIAANGKESYGSNGTSYLNDEEVFIIEQIIIKMLVNK
VDPSQIGVITPYIAQKQAIISRLSLNRRVSEAQLNDIEIASVDSFQGREKDFIIFSTVRS
NEISDIGFLSIPQRLNVSITRAKYGLVVVGNPETLMQNPLWCAYLQFFQNNNVLVHGQLE
NLKEYPIKLEPKEAPKAIYQFTPKVQEFSDIEPLKDIAIPFRQTRQQRSTLNPLDEFNIN
GNKEDEDDELDVTISEDDSDESQSEISDNEEDDGFTF
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacgactaaagataaagtacggtgttggtattgtgggttagccgataaaaag
aaacttatacgatgtgggtgtggtaagtatttttgtaatggtactggagatggaaaagta
agtcatattattcatcatgtgtcatcattaaaacataaagaccttaaatactcagacgaa
tatattcaatgtaatttatgtaaaacaagaaatccattcgttcttggatttcttcaagta
aaacaaaattctgatatgacaacgtgtttatgcagaacttgtagatataacactacaatt
caaaatcttggatgggatgtagatacttggacaagtattgtttgtgaaggaaaatttgta
aatgaagtatgtccacaaccaagtaatgaagaaatgaatattgttcaaagtatttcatat
caaaaaatgagaaaaatggcatgggaattacaaaataatcgaaaaaagtttgaagaagaa
acagaaacatttgaagaattacatcctatttatttaaattatcatgactgtaaacaatat
tatcatacttattatcctcttattcgattagaagctgaagctgatagacaaaaaagagaa
tcagaacatcttactaatatgacattgacttttgatggaacaagaacagaaaaagatatc
aaaaagattgttcatgtaagttttcaagttccattaaatgaagagatttcaatcacgatt
aatgacacattatttttctatgttccaatgaagaataaatcaattgaggttaatgaaatt
cataactatggtgaatttaatgaacaagaaaagaaagaatttcttggaaagattaatacc
tttttagttggaagtgttcaatcaattaaaggaaaagatgttacagtattattatcaaga
caagcagatattccaatagaaaaacaaatagttactcctcaaaatcaacaatttaaatat
tctatttgtttccactggctttctattccatttcgtagaaaaagaatggcattacttgat
ttttgtagaacagaagttgaaccaattgcagcatctatgtcaaagtatttaagagacaga
ctattaggaatgccaataactgaaattgacagacaaatggaacaacaatttaaagaagaa
aaagaaatgtatttaagtcgtcatccaactgaagcgtctttgagtgctcctaatcttcct
ccattaaatcaagttcaatttgatgtggtaagaaagtcatttacaaaacaattaagtctt
attcaaggacctcctggaactggtaaaacagttacttcagctactattgtttatcatgta
gtacagtcaaatcctggaaagaaagttcttgtctgtgcaccaagtaatattgctgtagat
caacttggaataaaaataattgaaacaggagtaaaagtgattagagtatacagtaaatct
agagaacttgcagaagaatcattgcatgattattcattaaaaacattgatgattgagcaa
ttaaaaaaagataaagaaatgtttttgttatatcaagattacaaagatgatccagactct
cttgatattgttaataaaacagcaattcaaaaaagaataaatgaaattgaacttgctctc
ttgagagaaacagatgttatttgttgtacttgttgtggggcattagacaatcgattaaat
ggtatattagaacatattgatacagtattaatagatgaaagtactcaagcagatgaacca
gagtgtttaatttgtttaaacaattcagtaaaacaactgtttcttgttggagatcattgt
caattaggaccaattcttaattcttcaagagcaaaaaagaatggacttggactccctatg
ttttcaagattattacaactaggacatgaaccgtatagacttcaattccaatatcgtatg
catccatgtttatcagaatttagttctcaaacattttatgatggtgtcttacaaaatggt
gttacagcacttgaaagacaattcccttcattaaaatatttctggtttaaacaaaataaa
cctatgatgtttattgctgcaaatggaaaagagtcatatggctctaatggtacctcttac
ttaaatgatgaagaagtttttattatagaacaaattattattaaaatgttagtaaataag
gttgatccatctcaaattggtgtaattacaccttatattgctcaaaaacaagctattatt
tcaaggctatcattaaatagaagggtttctgaagcacaattaaatgacattgaaattgca
tctgttgattctttccagggtagagaaaaagatttcattatcttttctactgtacgttca
aatgaaatatcagatattggatttctttctattcctcaaagactaaatgtaagtattact
agagcaaaatatggattagtggttgtaggtaatccggaaacattaatgcaaaatccattg
tggtgtgcttatcttcaattctttcaaaataataatgttcttgtacatggtcaattagaa
aacttaaaagaatatccaattaaacttgaacctaaagaagcaccgaaagctatttatcaa
tttacacctaaagtacaagagtttagtgatattgagccattaaaagacattgccattcca
tttagacaaacaagacaacaacgctctacacttaatcctttagatgaatttaatattaat
ggtaataaagaggatgaggatgatgagttagacgttacgatctcagaggatgatagtgat
gaaagtcaaagtgagatttctgataatgaagaagatgatggctttacattttaa
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integrated database retrieval system
