Entamoeba dispar: EDI_245240
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Entry
EDI_245240 CDS
T01083
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
edi
Entamoeba dispar
Pathway
edi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
edi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EDI_245240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
edi03041
]
EDI_245240
Enzymes [BR:
edi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EDI_245240
Spliceosome [BR:
edi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
EDI_245240
Complex C
U5 SnRNP specific factors
EDI_245240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
AAA_22
nSTAND3
SLFN-g3_helicase
PhoH
BRR2_plug
nSTAND1
AAA_30
AAA_19
NPHP3_N
T2SSE
Motif
Other DBs
NCBI-GeneID:
5881566
NCBI-ProteinID:
XP_001736568
UniProt:
B0EE60
LinkDB
All DBs
AA seq
1799 aa
AA seq
DB search
MAHIVDQFQKIPTGSEAVDRKNTWRTRVDNNLVISNRRGKRSNDDEPTGEAESLFGKITK
EMMGDHAQRTDPKEILKNLKEYRKDIDEELKKPYIPKRNKKVYDLDEIGGYVPTTKATKE
EHAKLLSVVQHIFSDKSFQFIRSATLDILDILKSDITANEKYQKLKEEISQGIKEDEFTE
MLQIADNITDYIKTDNPEEVEDENNNEGEDEVIPILNDSEEEGLGYSDDEIQEEQEQDEE
TNLHINNPMVMEDETKNNQFDNIDAFWLQRIIKGVVEDDNTAQEYAMKIEQVLGNTSLDD
GSVEHIIMSLLGQQNFGIVDMLAKNREEIIGRIAIARAPNEEIKEAIREKLPSQIKFSMS
QKQGIQKIEEEKKIQRTMRTLDLNALIFEGGNHFISNQQAIFPENTVRIDLPDYTQVDIP
FINQQLPPTNLISISSLPEWAQRSLTPLKYLNRMQSTVYPTVFETDDNVLVCAPTGAGKT
TVALLTILHEVKKAKETHEQFKIIYIAPMKSLVQEIVGTLQGKLENLGMKVAEMSGDSSL
TKKELEETDVIVATPEKIDVITRKIGGLGSGCGHGIFEYLKVMIIDEVHLLHDTRGPVLE
ALVARIKLFMESNSKYIRLVGLSATLPNCGDVGIFLNCKKENVFVFGSEYRPVPLQQTFF
GVADKKPLKQVQIMNRLTFQKVKESAGKQQVLIFVHSRKDTLETAKYIKEMALQENCLHS
FLQNRRASQEVLLSEAKKFDNEELKELIGVGIGIHHAGMNKEDRRLIEDLYADNHLQVLV
STATLAWGVNLPAHTVIIKGTQIYSPPTGRWEELSPMDVMQMIGRAGRPQFDKEGTGIII
TTQREMFFYMSLLSQQLPIESQFIGSLVDNLNAEVVIGNIKNIDDGIKWLTMTYYYICIL
RSPLLYGLQPNDFTNDPTLESRRRDLIHTAASLLHANGLAIYDKRKGTINATELGRISSY
YYLTTETIKSMNESLKKGSSEIDLMNIFSKSSEFKYVSIRETEKIELETLLNQVPIPIKS
TIEDPSCKISVLLQVYIGRLTLPGFVLASDTIFISQNAARIFRALFELLLIKRWARPALK
ALELCKSVTRRLFNSQCPLRQIPGVPNDICKRLERVDFPFERLFDLTSVQLGELIRLPTK
GNALYNIVHSFPLLNISTISQPINRTLLQIKVSLETMFNYDYRIHGTSLGYWIIVLDGNG
DYILYYQYFILKQTKSNQIHHLNAFVPLIDPLPFNYFVYCISDSYLKCSTSSVVSLRHLV
LPTKVSSPSELLGMALLPTQTFYQSLNINYKIFSFDLFNALQTQLYQAVVETNNSLYIAS
HSGSGKTVIAEMGLLKHIQEHNGKGAIYVMPFDEERDLLYLEMKNQSISVEMMKTDNKEV
EEQLKNVQVILASVHNLERYLRDWKQNGNIIRSIGIIILDDLQRVGEDVEYEMLISRIKT
IQKEYQNNIRIIGLSLPISDSKSMREWLGVTQNNCYSFSMKSRVYPINVQIEIMKQTEYS
MRLQAMIQPTIELLFNYWKQNKKSVITVPSKKLLLNTVQQFILLLQKNKIIQFNNQGRVE
PKSEIEEIIKQYKIKNEIAIQGICSGIGIIFNGEDEEEKIVIKNLFREGIIKTIFLTFNE
IEYFREQADEGILMGTIKSESNEKVLELEMIHKFIGCIKNGSVMIYCEPNKKEYLSKFLE
ESLPLESRLIQMGNEMYDNLIQLFNTEIANQTIVDYQSAINLLTSTFFYRRIRSNPSYYF
VEGREMSIISNYLSGLVETVFDKLKEMKFITIDEQTQTVQPTETGILAVNQINDTMELD
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atggcacatattgttgaccaatttcaaaaaatcccaactggatcagaagcggttgataga
aaaaacacatggaggactcgagttgataataatctggttattagtaatagaagaggaaaa
aggtctaatgatgatgaaccaactggagaggctgagtcattgtttgggaaaattactaaa
gaaatgatgggagatcatgcacaaaggactgacccgaaagagatattaaagaatttaaaa
gagtatagaaaggatattgatgaagaactaaagaaaccatacattcctaaaagaaataaa
aaggtttatgatttagatgaaattggagggtatgtccctactactaaggctactaaagaa
gaacacgccaaattattatccgttgttcaacacatattcagtgataaatcattccaattt
attcgttcagcaacattagacatattagatatacttaaaagtgatattactgcaaatgaa
aaatatcagaaattaaaagaagaaatcagtcaaggaattaaagaagatgaatttacagaa
atgcttcaaattgcagataatattactgactatatcaaaacagataacccagaggaagta
gaagatgaaaataataatgaaggagaagatgaagttattccaattttaaatgattcagaa
gaagagggactaggatacagtgatgatgaaattcaagaagaacaagaacaggatgaggaa
acaaaccttcacataaacaaccctatggtaatggaagacgaaacaaaaaataatcaattt
gataatatagatgcattttggttacaaaggatcattaaaggagttgttgaagatgataat
actgctcaagagtatgcaatgaaaattgaacaagttcttggaaatacttcacttgatgat
ggaagtgttgaacatataattatgtcgttattaggccaacaaaattttggtattgttgat
atgttagcaaaaaatagagaagaaataattggaagaattgctattgccagagcacccaat
gaagaaattaaagaagctattagagaaaaactcccttcacaaataaaattttcaatgagt
caaaaacaaggaatacaaaaaattgaagaagagaaaaaaatacaacgtacaatgaggact
ttagatttgaatgcattaatatttgaaggaggaaatcattttatttctaatcaacaagca
atattcccagaaaacacagtaagaattgatttacctgattatacccaagtcgatattcca
tttatcaatcaacaacttccacctactaatttaatatcaatttctagtttacctgaatgg
gctcaaaggtcattaacaccattgaagtatttaaatagaatgcaatcaacagtctatcct
acagtttttgaaactgatgataatgttttagtctgtgcaccaacaggtgctggtaaaaca
acagttgcacttttaactattctccatgaagttaaaaaagcaaaagaaactcatgaacaa
tttaaaatcatttatattgcaccaatgaaatcattagtacaagaaatagttggaacttta
caaggtaaattagagaatcttggaatgaaggtagctgaaatgtcaggagattcatcatta
acaaagaaagaattagaagaaactgatgttattgttgcaactccagagaagattgatgtt
attacaagaaaaattggaggacttggaagtgggtgtggacatggaatatttgaatattta
aaagtaatgattattgatgaagttcatttattacatgatacaagaggaccagtattggaa
gcattagtggcaagaataaaattgtttatggagtctaattcaaaatatattagactagtt
gggttaagtgcaacattacctaattgtggagatgtaggcatatttcttaattgtaagaaa
gaaaatgtttttgtttttggaagtgaatatagaccagttccattacaacaaacatttttt
ggagttgcagataaaaaaccattaaaacaagttcagataatgaatagattaacgtttcaa
aaggtcaaagagtcagctggaaaacaacaagtattaatttttgtacattcaagaaaagac
actcttgaaacagctaaatatattaaagaaatggcattacaagaaaattgtcttcatagt
tttcttcaaaacagaagagcaagtcaagaagttttgttatcagaagctaagaaatttgat
aatgaagaattaaaggagttgattggagttggtattggtattcatcatgctggaatgaat
aaagaggacagaagattaatagaagatttatatgctgataatcatctccaagtacttgtt
tctactgctacattagcatggggggttaatttaccagcacacactgttattattaaagga
acacaaatatattcaccacccacagggcgttgggaagaattaagtcctatggatgttatg
caaatgattggaagagctggaagaccacaatttgataaagaagggactggcattattata
actacacaaagagaaatgttcttttatatgtcattattgtctcaacaactaccaattgag
tcacaatttattgggtcattggttgataatttaaatgctgaagtagtaataggaaatatc
aaaaatattgacgatggaattaaatggttaacaatgacatattattacatttgtatttta
cgttctccattactttatggactacaaccaaatgactttacaaatgaccccacattagag
tctagaagaagagatcttattcatacagctgcatcattattacatgccaatggattagct
atttatgataaacgaaaaggaacaattaatgcaactgagttaggaagaatatcatcttat
tattatttaacaacagaaacaattaagtcaatgaatgaatcacttaagaaagggtcaagt
gaaattgatttaatgaatatattttctaagtcaagtgaatttaaatatgtttcaattaga
gagactgaaaagatagaacttgaaactttattaaatcaagtccctattcctattaaatca
actattgaagatccatcatgtaaaattagtgtattattgcaagtttatattggaagacta
acacttcctggatttgtattagcctctgacactatctttatttcacaaaatgctgctcgt
atatttagagcattatttgaattattacttattaaaagatgggcaagaccagcacttaaa
gcattagagctttgtaaatctgttacaagaaggttatttaatagtcaatgtccacttaga
caaataccaggtgtccctaatgacatttgtaaacgtttagaacgagttgattttccgttt
gagagattgttcgatctaacttcagttcaattaggagaattgattagattaccaacaaaa
ggaaatgcattatataatatagttcattcgtttcctttattaaatatatcaactatatct
caaccaattaatagaactttacttcaaattaaagttagtcttgaaacaatgtttaattat
gattatagaattcatggaacatcattagggtattggattattgtattagatggtaatgga
gattacatcttatactatcaatacttcattctcaaacaaaccaaatcaaatcaaattcat
cacctcaacgcttttgttcctttaattgatccattaccatttaattattttgtatactgt
attagtgattcctatttaaaatgttctacatcatcagtagtatcattgagacacttagtg
ttaccaactaaagtttcatcaccaagtgaattattaggaatggcattattaccaacacaa
acgttctaccaatcattaaatattaattataaaatattttcatttgatttatttaatgca
cttcaaacacaattatatcaagctgttgttgaaacaaataattcgttgtatattgcatca
catagtggttcagggaaaacggttattgcagaaatggggttattgaaacatatacaagag
cataatggaaaaggagctatttatgtaatgccttttgatgaagaacgagatttgttatat
ttggaaatgaaaaatcaatccatttcagtcgaaatgatgaaaacagataacaaagaggtt
gaagaacaattaaaaaatgtacaagttattcttgcaagtgttcataacttagaaagatac
ctcagagattggaaacaaaatggaaatataattaggtctattggaattattattcttgat
gatttacaaagagtaggagaagatgttgaatatgaaatgttaatatcaagaattaaaact
atccaaaaagaatatcaaaataacattagaattattggattgtcattacctattagtgac
agtaaatcaatgagagagtggttaggtgttacacaaaataattgttattcattctcaatg
aaatctcgagtttatccaattaatgttcaaatagaaattatgaaacaaactgaatattcg
atgagacttcaagcaatgattcaaccaactattgaattactttttaattattggaaacaa
aataaaaagagtgttattacagttccaagtaaaaaattattattaaatacagtccaacaa
tttattcttttattacaaaaaaataaaataattcaatttaataatcaaggaagagttgaa
ccaaaaagtgaaattgaagaaataattaaacaatataaaattaaaaatgaaattgccatt
caaggtatttgtagtggaattggaattatatttaatggagaagatgaagaagaaaaaatt
gttataaaaaatttatttagagaaggtattattaaaacaatatttttaacttttaatgaa
attgaatattttagagaacaagcagatgaaggaattttaatgggaacaattaaatcagaa
tcaaatgaaaaagttcttgaattagaaatgattcataaatttattgggtgtattaaaaat
ggaagtgttatgatttattgtgaaccaaataaaaaagagtatctgagtaaatttttagaa
gaatctcttccattagaaagtagattaattcaaatgggaaatgaaatgtatgacaattta
attcaattatttaatactgaaattgctaatcaaacaattgttgattatcaaagtgctatt
aatttattaacaagtacattcttttatagaagaataagaagtaacccaagttattatttt
gttgaaggacgagaaatgagtattatatcaaattatttatcaggtcttgttgaaactgtt
tttgataaattaaaagaaatgaagtttattactattgatgagcaaacacaaactgttcaa
ccaacagaaactggaatcttagctgtgaatcaaatcaatgacacaatggaattagattga
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