Edwardsiella sp. LADL05-105: AAZ33_06080
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Entry
AAZ33_06080 CDS
T04005
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
edl
Edwardsiella sp. LADL05-105
Pathway
edl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
edl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AAZ33_06080 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
edl03400
]
AAZ33_06080 (sbcB)
Enzymes [BR:
edl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AAZ33_06080 (sbcB)
DNA repair and recombination proteins [BR:
edl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AAZ33_06080 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AAZ33_06080 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAZ33_06080 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AKR77319
UniProt:
A0AAC8ZL48
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All DBs
Position
complement(1340953..1342380)
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AA seq
475 aa
AA seq
DB search
MKNRSIQNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQP
DAVMITGITPQTALAQGVCEAEFAERIHRMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFF
DPYAYSWQNGNSRWDLLGVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAH
DAMADVYATIALARLVKQAQPRLFDYLFQLRNKNRVAQLIDIATMTPLVHVSGMFGALRG
NTSLIAPLAWHPENKNAVIVCDLDSDITPLLTLDPAALRERLYTPRSELGDAVPVPIKLV
HINKCPVLAPEKTLLADNAVRLGLDRPRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSD
DVDNQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDRRITPLLFRYRARNYPATLDE
SEMRRWQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQRLTLLRALFDYARELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaccgaagcatacaaaatacattcctgtttcacgactatgaaaccttcggtcag
catccggcgcgggatcgtcccgctcagttcgccggcgtgcgcaccgacgccgacttcaac
atcatcgaagaaccccaggtgttttactgccggccggccgatgattacctgccccagccc
gacgcggtgatgatcaccgggatcaccccgcagacggcgctggcgcagggggtctgtgag
gccgaattcgccgagcgtatccaccggatgttcagcgtgccgggcacctgtgtcgtgggc
tataacaacattcgcttcgacgatgaggtgagccgcaacctgttctaccgcaacttcttt
gacccctacgcctacagctggcaaaacggcaactctcgctgggatctgctgggtgtggtg
cgcacctgctacgccctgcgccccgaggggatcgtctggccggaaaacgagcaggggttg
cccagcttcaagctggagcacctgtctcaggccaacggcattgagcacagcaacgcccac
gacgccatggccgatgtctacgccaccatcgcgctggccaggctggtcaaacaggcccag
ccgcggctgttcgactatctgttccagctgcgcaacaagaaccgggtggctcagcttatc
gatatcgccacgatgacgcccctggtgcatgtctccggcatgttcggcgccctgcgcggt
aacaccagcctgatcgccccgctggcctggcatcccgagaataaaaacgcggtgatcgtc
tgcgatctggacagcgatatcaccccgctgctgaccctggaccccgccgccctgcgcgaa
cggctctacacgccgcgcagcgagctgggcgacgccgtgccggtgcccatcaagctagtc
catatcaataaatgtccggtgctggcgccggagaaaaccctgctcgcggacaacgccgtc
cgactggggctcgatcgcccgcgctgccgggataatttagccctgctacagcagcacagc
gagatccgtgacaaggtggtatccctatttgccgatgcgccaccctttccgccatcggac
gacgtggacaaccagctgtacgacggcttcttcagcgacgccgatcgccaggcgatgcaa
attattcgcgccacccagccgcagaacctgccggcgctggatctacgcttcagcgatcgg
cgcatcacgccgctgctgtttcgctaccgcgcccgtaactacccggcgacgctggatgag
agcgagatgcgccgctggcagcagcatcgccaggccatgctgacgccgcagcgcgtacag
gattatctacagacgctggaaatgctgtacaaccgctatgaggatcagccccagcggctg
acgctgctgcgggcgctgtttgattatgcccgtgaattagtaggataa
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