Edwardsiella sp. LADL05-105: AAZ33_09065
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Entry
AAZ33_09065 CDS
T04005
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
edl
Edwardsiella sp. LADL05-105
Brite
KEGG Orthology (KO) [BR:
edl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edl03019
]
AAZ33_09065 (hrpA)
Enzymes [BR:
edl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AAZ33_09065 (hrpA)
Messenger RNA biogenesis [BR:
edl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AAZ33_09065 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
T2SSE
nSTAND3
AAA_23
PhoH
AAA_30
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AKR79395
UniProt:
A0AAC8VD98
LinkDB
All DBs
Position
complement(2015503..2019387)
Genome browser
AA seq
1294 aa
AA seq
DB search
MKSPLGALADQLDDVMLRDRQRLMRRLQGANKITQPDTLQATAATLAEEIARARQATANR
RAVCPTISYPPGLPVSQKSEALLAAIRDNQVVIVAGETGSGKTTQLPKMCLALGRGVRGM
IGHSQPRRLAARSVAERIAHELDTPLGSCVGYKVRFSDRVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPQRFSRHFNNA
PIVEVSGRTYPVEVRYRPIADGEGDRDQTQAIIDAVDELRHEAPGDILIFMSGEREIRDT
ADALNRLELPHTEVLPLYARLSAAEQNRVFHAHSGRRIVLATNVAETSLTVPGIKYVIDP
GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYDEQDFLSRPAFTDP
EILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAVTVNARGHQQLT
ALGRQLAQLPIDPRLARMVIEGERNGALREVMVIAAGLSIQDPRERPADRPQAADEKHRR
FSDKESDFLALVNLWNYLREQQQALSANQLRRLCKSEFLNYLRVREWQDIYTQLRQSVKS
LGFHINSTPADYRALHCALLSGLLSHIGQKDVEKQEFTGARNARFAIFPGSSLFKKPPKW
AMVAELVETSRLWGRVAARIDPEWIEPLAQHLIKRSYSDPHWEKSQGAVMASEKVTLYGL
PIVNERRVNYGRIDPLLCRELFIRHALVQGEWQTKHAFMRANQRLRSEVEELEHKSRRRD
ILVDDETLFAFYDRRIGQEVVSVRHFDSWWKKAGAAQPELLNFEKSMLIKEGAARISAQD
YPNAWQQGNFRLRLSYQFEPGADADGVTVHIPLAILNQIEDRDFDWQIPGIRRERVMALI
KSLPKPQRRNFVPAPNYADAFLARATPFELPLLESMERELRRMTGVTVSRDDWQLDQLPD
HLSVTFRVLDDRNRPLAEGKSLEALKQRLKDRVQQTLSAVADDGLEQAGLHLWSFGQLPQ
CYEQKRGGYAIKAYPALVDEKESVAIRLFETEQEQQQAMRTGLRRLLLLNIPSPVKYLHE
KLPNKAKLGLYFNPYGKVLELIDDCIACGVDTLVARHGGAVWESAAFEALHERVRGELNE
TVVAIAAQVERILTCANGINKRLKGRVDMTMALALSDIKAQMGGLIYRGFVTATGADRLA
DVERYLHAIERRLEKLGIDPHRDRAQMLRVEQVQQAWQQWRNRLPSVRHQAPEVLAIRWM
IEELRVSYFAQQLGTPYPVSDKRILQAMEAAEQP
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatccccgcttggtgcgctggccgaccagcttgatgatgtcatgctgcgcgatcgc
cagcgtttgatgcgccgtctccagggcgccaataagatcacccaacccgataccctgcag
gcgaccgccgcgacgctggcggaggagatcgcccgggcgcgtcaggcgacggccaaccgg
cgcgccgtctgtccgacgattagctatccgccggggctgccggtcagccagaagagcgag
gcgctgctggcggcgatccgcgataatcaggtggtgattgtcgccggggagaccgggtcc
ggtaaaacgacccagctgcccaaaatgtgtctggcgctggggcgcggggtgcgcgggatg
attggtcacagtcagccgcgccgcctggctgcccgttcggtggcagagcgtatcgcccat
gagctggataccccgctgggcagctgcgtgggctataaggtacgctttagcgatcgggtc
ggcgacaacacgctggtcaagctgatgaccgacgggatcctgctggcggagatccagcag
gaccgcctgctgatgcagtatgacacgctgatcatcgatgaggcccacgaacgcagcctg
aacatcgactttatcctgggctatctgcgccagctgctgcccaggcgtcctgacctcaag
gtgatcatcacctcggcgaccattgatccgcagcgtttctcccgccacttcaataatgcg
ccgatcgtcgaggtgtccggacgtacctatccggttgaggtgcgctaccggcctatcgcc
gatggtgaaggcgatcgcgatcagacccaggcgattatcgatgcggtggatgagctgcgc
catgaggcgccgggcgatattctgatctttatgagcggtgagcgtgagatccgcgatacc
gctgatgcgctgaaccgccttgaactcccccataccgaggtgctgccgctgtatgctcgc
ctgtccgccgccgagcagaaccgggtctttcacgcccatagcgggcggcgtattgtgctg
gcgaccaacgtggcggagacctcgctgacggtgccggggatcaaatatgttatcgatccc
ggtacggcgcgcatcagtcgctacagctatcgcaccaaggttcagcggctgccgattgag
ccgatatcccaggcgtcggccaatcagcgtaaagggcgctgcggccgtgtctccgacggg
atctgtatccggctgtacgatgaacaggacttcctgtcgcgtcccgcctttaccgatccg
gagatcctgcgcaccaatctcgcgtcggtgatcctgcagatgacggcgctggggctgggc
gatattgccgccttcccctttgtcgaggcgccggacaagcgcaatattcaggatggggtg
cgcctgctggaggagctgggcgcggtcactgtcaatgcgcgtggacaccagcaactgacc
gcgctgggacgtcagctggcgcagctgcccatcgatccgcgtctggcgcgcatggtgatc
gaaggggagcgcaacggcgccctgcgcgaggtgatggtgatcgccgccgggctgtcgatt
caggacccgcgtgaacggcccgccgatcgtccccaggcggcggatgagaagcaccgtcgc
ttcagcgataaagagagcgactttctggcgctggtcaatctgtggaactatctgcgcgaa
cagcagcaggcgctctccgccaaccagctgcgcaggctgtgtaaaagcgaatttctcaac
tatctgcgggtgcgcgagtggcaggatatctatacccagctacgtcagtcggtgaaatcg
ctgggattccatattaacagtactcccgccgattaccgggcgctgcactgcgcgctgttg
agcggtctgctctcccacatcgggcagaaagatgtcgaaaagcaggagtttaccggcgca
cgcaacgcccgtttcgccattttccccggctcgtcgctgtttaagaagccgcccaagtgg
gcgatggtggcggagctggtggagacctcccgcctgtggggacgcgtcgctgcccgtatc
gatccggagtggatcgagcccttggcacagcacctgattaagcgcagctatagcgatccg
cactgggagaaaagccagggggcggtgatggccagcgagaaggtcacgctgtatggtctg
ccgatcgtcaacgagcggcgggtcaactacggacgtatcgatccgctactgtgccgagag
ctgtttatccgccatgccctggttcagggggagtggcagacaaagcacgcctttatgcgc
gccaatcagcgcctgcgcagcgaggtcgaagagctggagcacaaatcgcgtcgccgcgat
attctggtggatgacgagacgttgtttgctttttatgaccgccggatcggtcaagaggtg
gtgtcggtgcgccacttcgacagctggtggaagaaagcgggggctgcgcagcctgagctg
ctcaactttgaaaagtcgatgctgatcaaagagggggcggcccgcatcagcgcgcaggat
taccccaacgcctggcagcagggcaactttcgcctgcgtctttcctatcagttcgagccg
ggcgcggacgccgacggcgtgacggtgcatattccgctggcgatcctgaatcagatcgag
gatcgcgattttgattggcagatccccggtattcgccgtgagcgggtgatggcgctgatc
aagtcgctgccgaagccgcagcggcgtaactttgtgccggcgcccaactatgccgatgcc
tttctggcccgtgcgacgccctttgagctgccgctgctggagtcgatggagcgtgagctg
cgccgcatgacgggtgtgacggtgtcacgcgatgactggcagctggatcagttgcccgat
cacctgagcgtaacgttccgggtgctggacgatcgtaaccggccactggccgaaggtaag
tcgctggaggcgctgaagcagcgtttgaaggatcgtgtgcagcaaaccttgtcggcggtg
gcggacgatggccttgagcaagcggggctgcatctgtggagctttggccagctgccacag
tgctatgagcaaaagcgcggcggctatgccatcaaggcctacccggcgctggtggatgag
aaagagagcgtggcgatccggctctttgagaccgaacaggaacagcaacaggcgatgcgc
accggcctgcgccggctgctgctgctgaatattccatctccggtgaagtatctacatgaa
aaactgccgaacaaggccaagctgggactctattttaatccctatggcaaggtgctggag
ctgatcgacgactgcatcgcctgcggcgtggatacactggtggcgcgccacggcggcgcc
gtctgggagagcgcggcatttgaggcgctgcatgagcgggtgcgcggcgagctgaatgag
acggttgtcgcgattgccgcacaggtcgagcgcattctgacctgtgccaacgggatcaat
aagcgtctgaaagggcgggtagacatgacgatggcgctggccctctccgatatcaaggcg
cagatgggtgggcttatctaccggggctttgtcacggccaccggcgcggatcgcctggcg
gatgtggagcgctatctgcacgctatcgaacgtcgcctggagaagctgggcatcgaccca
caccgcgatcgggctcagatgctgcgcgttgaacaggtacagcaggcctggcagcagtgg
cgtaaccgtctaccgtcggtgcggcatcaggcgccggaggtgctggctatccgctggatg
atcgaggagctgcgcgtcagctattttgcccagcagctgggtacgccctatccggtgtca
gacaagcgtatcctgcaggcgatggaggcggcggagcagccatag
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