Edwardsiella sp. LADL05-105: AAZ33_12160
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Entry
AAZ33_12160 CDS
T04005
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
edl
Edwardsiella sp. LADL05-105
Pathway
edl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAZ33_12160 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edl03019
]
AAZ33_12160 (rhlE)
Enzymes [BR:
edl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAZ33_12160 (rhlE)
Messenger RNA biogenesis [BR:
edl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAZ33_12160 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AKR78282
LinkDB
All DBs
Position
complement(2735796..2737118)
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AA seq
440 aa
AA seq
DB search
MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL
QLLHQNPKNGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLI
GTRDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDI
ERLLKRPIPRMAIAGYEPDPTIKAEPIQNGRQGGRQNSGRSERAGQGRRAEGPRSAAPRQ
GQNRRPRRPAEQGKGRTEGR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggcctgtgtgccgaactgttacgcgctgtggaagagcagggc
tatcgtgatccgaccccgatccagcagcaggccattcccctggtgctgcagcgtcgcgat
ctgatggccagcgcccagaccggcaccggtaagaccgccggctttacgctgccgctgctg
cagctgctgcaccagaaccccaaaaatggtaagggacgccgcccggtgcgggcgctgatc
ctgacgccgacccgcgagctggcggcgcagatcggtgaaaacgtacgcgagtacagccgt
catctgccgctgcggtcgctggtggtgttcggcggcgtgagcattaatccgcagatgatg
aagctgcgcggcggcgtggatgtgctggtggcgacaccggggcgcctgctggatctggcc
catcagaatgcggtggatctgtctcaggtcgagatcctggtgctggatgaggccgaccgg
atgctggatatgggctttattcacgacattcgccgcgtgctggcccgtctgccggccaag
cggcaaaacctgctgttttccgccaccttctccgatgagatcaaggcgctggcggcttcg
ctgctgcataacccggccgaggtggaagtggcgcgccgcaataccgcgtcagagctggtg
actcagcacgtgcatctggtggataagaagcgcaagcgcgagctgctctctttcctgatc
ggcacccgggactggcgtcaggtgttggttttcacccgtaccaagtacggcgccaaccac
ctagcggagcagctgaataaagacggcatcagcgcggcggcgatccacggcaacaagagc
cagggcgcgcgtacccgtgcgctggcggactttaagagcggtgatattcgggtgctggtg
gcgacggatatcgccgcgcgcggcctggatatcgatcagctgccctacgtggtgaactat
gagctgcccaacgtgccggaggactacgtgcaccgtatcggccgcaccgggcgggcccag
gcgaccggcgaggcgctgtcgctggtctgcgtggatgagcacaagctgctgcgcgacatc
gaacgtctgctgaagcgcccgattccgcgcatggccattgcgggctatgagccggatccg
accattaaggctgagccgattcagaatggccgccagggcgggcgccagaacagcggtcgt
tcggagcgtgcggggcaggggcgccgcgcggaggggccgcgtagtgcggcgccgcgtcag
gggcaaaatcgccgcccgcgccgtccggccgagcagggtaaggggcgtaccgaggggcgc
taa
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