Edwardsiella sp. LADL05-105: AAZ33_14330
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Entry
AAZ33_14330 CDS
T04005
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
edl
Edwardsiella sp. LADL05-105
Brite
KEGG Orthology (KO) [BR:
edl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
edl03009
]
AAZ33_14330 (rlmD)
Enzymes [BR:
edl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AAZ33_14330 (rlmD)
Ribosome biogenesis [BR:
edl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AAZ33_14330 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
Cons_hypoth95
TRM5-TYW2_MTfase
MTS
Methyltransf_11
RrnaAD
Methyltransf_15
Methyltransf_4
Ubie_methyltran
FtsJ
Methyltr_RsmB-F
Methyltransf_23
UPF0020
PrmA
Motif
Other DBs
NCBI-ProteinID:
AKR78610
UniProt:
A0AAC8ZLU4
LinkDB
All DBs
Position
complement(3197489..3198805)
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AA seq
438 aa
AA seq
DB search
MAQFYTPGRRTATRKNLIVTATDLDAFGQGVARDKGKTLFISGLLPGEEAEVILSEEKRQ
FSRGRVTRLISHSPQRVAPRCPHAGVCGGCQQQHAAIALQQQSKSQALQRLMARETGVDM
APQVIAGEPYGYRRRARFGLQFNARTQRVVLGFRQAASNDLVALKACPVLAPALEALLLP
LGECLSALRARRRLGHLELALADNGPLMVLRHLDPLALSDREALGAFARQRGLTLYLSDG
GAPQRLLGEAPYYQIDGIRLDFNPQDFIQVNAAVNTQMVEQALAWLDVRADERVLDLFCG
MGNFTLPLARRAQRVVGVEGVPELVVTAQNNARNNGLSNVEFFHQNLEEDVTRQAWAAQG
FDKILLDPARAGAPGVMQHIVRLAPRRVVYVSCNPTTLARDSKTLLQGGYRLTRLCMLDM
FPHTGHLESMALFESAAQ
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggctcaattttacacaccggggcgccgtaccgcgacccggaaaaacctgattgtgacc
gccaccgatctggatgcctttggccagggggtggcgcgcgataagggcaagacgctgttt
atcagcggactgctgcccggcgaggaggccgaggtcatcctgagcgaggagaaacgccag
ttttcccgcgggcgggttacgcgtttaatcagccacagcccgcagcgggtggcgccgcgc
tgcccccacgccggcgtctgcggcggctgtcagcagcagcatgcggcgatcgcgttgcag
cagcagagcaagtcgcaggcgctacagcgtctgatggcgcgtgagaccggggtggatatg
gcgccgcaggtgatcgccggagagccctatggctaccggcggcgcgcccgctttgggcta
cagtttaacgcgaggacgcagcgggtggtgctggggttccgtcaggcggcctctaacgac
ctggtggccctgaaggcctgcccggtgttggcgcccgcgctggaggcgctgctgctgccg
ctgggcgagtgtctgtcggcgctgcgcgcgcggcgccgtctgggacacctggagctggcg
ctggccgacaatgggccgctgatggtgctgcgccatctggatccgctcgcgttgtcggat
cgggaggccctgggcgcctttgcccgccagcgcgggctcacgctgtacctgagcgacggc
ggcgcaccgcagcgcctgctcggcgaggcgccctattaccagatcgacgggatccgcctg
gattttaacccgcaggattttatccaggtgaacgccgcggtaaatacgcagatggtcgaa
caggccctggcctggctggatgtcagggccgatgagcgcgtgctggatctgttctgcggc
atgggcaactttaccctgccgctggcgcgccgcgcccagcgggtggtgggcgtcgagggg
gttcccgagctggtggtgacggcgcagaataatgcacgtaacaacgggctgagtaatgta
gaattcttccatcagaatctggaggaggacgtgacgcgtcaggcctgggcggcacaggga
tttgacaagattttgctcgatccggcgcgcgccggcgcccccggggtgatgcagcatatc
gttcgcctggcgccgcgtcgggtagtctatgtctcttgtaacccgaccacgctagcccgg
gacagtaagacgctgctgcagggcggctatcggttgacgcgtttatgtatgctggacatg
tttccccacacggggcatttggagtcgatggcgctgtttgaatcggcggcgcaatag
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