Enterococcus durans: LIU_00345
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Entry
LIU_00345 CDS
T04048
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
edu
Enterococcus durans
Pathway
edu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIU_00345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edu03019
]
LIU_00345
03009 Ribosome biogenesis [BR:
edu03009
]
LIU_00345
Enzymes [BR:
edu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIU_00345
Messenger RNA biogenesis [BR:
edu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIU_00345
Ribosome biogenesis [BR:
edu03009
]
Prokaryotic type
rRNA helicases
LIU_00345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKZ47072
UniProt:
A0A2A7SSG7
LinkDB
All DBs
Position
complement(86016..87527)
Genome browser
AA seq
503 aa
AA seq
DB search
MKFKELELSPELLKSVERAGFEEATPIQSETIPLALSGKDVIGQAQTGTGKTAAFGLPML
EKIDTNRNELQGLVISPTRELAIQTQEELYRLGRDKRVRVQAVYGGADIGRQIRGLKDRP
HIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIESIISRVPDQRQTLLF
SATMPPAIKNIGVKFMKDPVHVKIKTKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQSPE
LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVIENLTKK
RMTTLRPPTEKEAFKGQLGAAIEQIEAKLEENGLDKYLQTADKLLEEYSAQDLVALLLKT
TAKDPSDAVPVKITPERPLPMQKKGYNKNGKRGGGNNRNRRDNGNYRGNKSKGGYNKNSS
HQKDGGKRQNDKKRGFVIRTNND
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaaagaactagaattatcaccagaattattgaaatcagtagagcgtgcaggc
tttgaagaagcaacaccaatccagtcagaaacaattcctttagcattgtctggaaaagac
gtgatcggacaggcacaaacaggaactggtaaaacggctgcttttggtttgccaatgtta
gaaaaaatcgatacaaatcgtaacgaactacaaggattagttatttcaccaactcgtgaa
ttggcaatccaaacacaagaagaactttaccgtcttggccgcgacaaacgcgtacgcgtg
caagctgtctacggtggagcagatatcggccgtcaaatccgtggattaaaagatcgtcca
catatcgttgtcggtacaccaggacgtatgttagaccacatcaaccgtcacacattgaaa
ttagggactgttgaaacactagtattagacgaagcagacgaaatgctgaacatgggcttc
ttagaagatatcgaaagtatcatctctagagttcctgaccaaagacaaacattattgttc
tcagcaacgatgcctccagcgatcaaaaatatcggcgtgaaattcatgaaagatccagta
cacgtgaaaatcaaaacaaaagaaatgactgctgatttgatcgatcaatactatgtacgt
gcaaaagaatatgaaaaatttgacatcatgactcgtttgtttgatgtacaatcacctgaa
ttaacgattgttttcgggcgtacaaaacgacgtgtggatgaattagctcgtggactagaa
gctcgtggctatcgagcagaaggaattcacggagatctttcacaacaaaaacgtatgagt
gtattacgctcattcaaaagcggacatctagacattttagttgcgacagacgttgcggct
cgtggactagacatctcaggtgtgacgcacgtgtacaactatgatatccctcaagatcca
gaaagctatgttcaccgtatcggtcgtacagggcgtgccggaaaaggcggaatgtcagta
acttttgttacaccaaacgagatggattatcttcatgtcattgaaaacttaacgaaaaaa
cgtatgactacattgcgtcctcctactgaaaaagaagcattcaaaggacaattaggcgca
gcgattgaacaaatcgaagcaaaactggaagaaaatgggttagataaatatcttcaaaca
gctgataagcttttagaagaatattctgctcaagatctagtagcgttgttattaaaaaca
acagcaaaagatccttcagacgcagtcccagttaaaatcacaccagaacgtccattgcct
atgcagaaaaaaggctataacaagaatggtaaacgtggtggcggcaataaccgtaatcgc
cgtgataatgggaattatcgtggaaacaaatctaaaggtggatataacaaaaacagtagc
caccaaaaagatggcggtaaacgtcaaaacgataaaaaacgtggttttgtgattcgcaca
aataatgattaa
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