Enterococcus durans: LIU_12145
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Entry
LIU_12145 CDS
T04048
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
edu
Enterococcus durans
Pathway
edu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIU_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edu03019
]
LIU_12145
Messenger RNA biogenesis [BR:
edu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LIU_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AKZ49041
UniProt:
A0A2A7SQJ1
LinkDB
All DBs
Position
complement(2572263..2573942)
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AA seq
559 aa
AA seq
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MSTIKIIPLGGVRENGKNMYIAEVGEDIFVLDCGLKYPENELLGIDVVIPDFTYLEENID
RVAGVFLTHGHADAIGALPYLLSKLSVPVFGTELTIELAKLSVSRNDAAKGFKDFHVVDE
HTEIDFGETIVSFFRTTHTIPDSIGINLKTKEGSIVYTGDFKFDQTAIPMYQTDYARLAE
IGKEGVLALLSESANAENPVPVASELQIADEVFDTIKYWEGRIIVACVASNLQRVQQVLD
AAEKAQRKVVLTGQDFERIIRTAMRLEKLQLPSEDLLVTLKDMKKYKPEELIILETGRMG
EPIKSLQKMANGTHRNIKIEEGDLVYITTTPSIAMETMVAKTEDMIYRAGGSVKLISENM
RVSGHANPNDLQLMLNFMKPTYFIPVQGEYRELAAHADLAHAVGIPYKNIYITGRGDVLE
YKNKRMSVAGTISAENVMIDGLGIGDIGNIVLRDRKILSEDGIFVAVVTISRREKKIISK
PQITSRGFVYVKASRDLMKESSNMIEEIVGKHLESNDFEWSKLKQDIRDQLGRYLFEQTK
RRPVILPVIMEATQRRGKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccattaaaattattcctttaggcggcgtacgtgaaaatggaaaaaacatgtat
atcgctgaagtgggagaagacatttttgtgttagactgcggtctaaaatatcctgaaaac
gaattgttaggaatcgatgtcgtcattcctgattttacgtatttggaagaaaatatcgat
cgtgtagctggtgtctttttgacacatggacatgcggacgcaatcggagcactaccttat
ttattatcgaagttatctgttcctgtttttggtacagagctaacgatcgagttagcaaaa
ttgagtgtcagtcggaatgatgccgcaaaaggattcaaagattttcatgtagtagatgaa
cacacagaaatcgattttggtgaaacaatcgtcagtttcttccgtacaacacacacgatc
cctgattcaataggtatcaacttgaaaacaaaagaaggcagcatcgtctacacaggggat
ttcaaattcgatcagacagcgatcccgatgtatcaaacagattatgcccgtctagctgag
attggtaaagaaggggttcttgctttgcttagtgagtcagcaaatgcagaaaacccagta
ccggttgcatctgaattgcagattgcagatgaagtgttcgatacgatcaagtattgggaa
ggcagaattattgtcgcttgcgtagcaagtaacttgcaaagagttcaacaagtgttggat
gcagcagaaaaagcgcaacgaaaagtggtgttgactggtcaagattttgaacggatcatt
cggacagcgatgcgcttagaaaaactccaacttcctagtgaagatctacttgttacgttg
aaagatatgaaaaaatataaaccagaagagctgatcatcctagaaacaggtcgcatgggt
gaacctatcaagtctttacaaaaaatggcaaacggtacgcaccgtaacatcaagatcgaa
gaaggcgatttggtctatattacaaccactcctagcatcgcaatggaaacaatggtcgct
aaaacggaagatatgatctatcgagctggcggatcggtgaaacttatttctgagaatatg
cgggtatctggccatgcgaatcctaatgacttacagctgatgctgaactttatgaagcca
acttattttattcccgttcaaggagaatatcgtgaattggctgcacatgctgatttagcc
cacgctgttggaatcccatataaaaatatctatattacagggcgtggcgatgtcttagaa
tataaaaataagcggatgagtgttgctgggacaatcagcgctgagaatgtcatgatcgat
ggactaggtattggtgatatcggaaatatcgtattacgtgatcgaaagatcctgtcagaa
gatggaattttcgtggcagtcgttacgatcagtcgccgtgagaagaaaatcatctcaaaa
ccgcaaattacatcacgtgggtttgtctatgtaaaagcgagtcgtgatttgatgaaagaa
agcagcaatatgatcgaagaaatcgttgggaaacatttagaaagcaatgattttgaatgg
agtaaactcaaacaagatattagagatcagcttggacgctatttgttcgaacaaaccaaa
cgacgtcctgtcatcttgccagtgatcatggaagctactcaacgtagaggtaaaaaataa
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