Enterobacter dykesii: F0320_07880
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Entry
F0320_07880 CDS
T10162
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
edy Enterobacter dykesii
Pathway
edy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
edy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0320_07880 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
edy03019
]
F0320_07880 (rne)
03009 Ribosome biogenesis [BR:
edy03009
]
F0320_07880 (rne)
Enzymes [BR:
edy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F0320_07880 (rne)
Messenger RNA biogenesis [BR:
edy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0320_07880 (rne)
Ribosome biogenesis [BR:
edy03009
]
Prokaryotic type
rRNA processing factors
F0320_07880 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
XBN41302
UniProt:
A0AAU7J624
LinkDB
All DBs
Position
complement(1665572..1668700)
Genome browser
AA seq
1042 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETTTLSYLLPKLHEEEMSLPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPAAQKPEAAVAKAQPAQPGLLSRFFGALKKMFAEEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRNDRNDRNDRSERRDNRDNRSENSEGREQREDNRRNRREKQQ
SNVEDREIRQQAGDETEKSKQRDDQQPRRERSRRRNDEKRQAQQEVKNLNREEPVEQQDG
EQEERTQVMPRRKQRQLSQKVRFASEVTEESAVVAVETSESTTGTQLAKVDLPAVVENNV
EQDDNGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTIACASPEMASG
KVWIRYPVARPEQVVEEQPVTEEVIAPVAAVEDVVTEAATVVEPQIVETEAPQAVEVETT
HPEVIAAPVDAAPQLIAEEDAVVAEEIAEVAEPVAAVEDTAETLVETTTEEVVQDVEIEV
EPVVEEPKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPEFNFEGKG
AAGGHSATHQATAPATRPQSVE
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccccgca
aactacaacgcccatggccgcccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagagcgcggcaacaaaggtgccgcactgaccacctttatc
agcctcgcagggagctatctggttctgatgcctaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagcctcgaactg
cctgatggcatggggcttatcgtgcgtaccgcaggcgttggcaaatcagccgaagcgctg
cagtgggacctgagcttccgtctgaagcactgggaagccatacagaaagcagcggaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgat
tatctgcgtcaggacatcggtgagattctgatcgataacccaaaagtgcttgagctggcg
cgccagcacatcgccgcgctgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagatcgaatcccagattgagtccgccttccag
cgtgaagtgcgtctgccatccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacgcgcggtggcgatatcgaagagaccgcctat
aacacgaacctcgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgatcgttatcgacttcatcgacatgacccctgttcgccaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtgcgtcaggaccgagcgcgtatccagattagccatatctca
cgctttggcctgctggagatgtcccgtcagcgtctgagcccgtctctcggcgagtccagc
catcacgtttgtccgcgctgctccggcaccggtaccgtacgtgataacgaatctctgtct
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgtgccggttcccgttgcctcttacctgcttaacgaaaaacgtgcagcggtaagt
gcaattgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatgcag
accccgcactatcacgtactgcgcgtgcgtaagggcgaagagacgaccaccctcagctac
ctgctgccgaagctgcatgaagaagagatgtccctgccttccgatgaagagccagccgag
cgcaaactgccagagcagcctgcgttagcgaccttcatcatgcctgaagcaccaccggaa
gcagccctggaaaaacctgcggccaaacctgcagcgcagaaaccagaagccgcggtagcg
aaagcccagccggcacagccgggtctgctgagccgcttctttggcgcgctgaagaagatg
tttgctgaagaagaagttcagccagagcagccgaaagaagagcctaaagcagccaagcca
gagcggcagcaagaccgccgcaagcgtcagaacaaccgccgcgatcgtaatgaccgcaac
gaccgtaatgaccgtaatgaccgtagcgagcgtcgtgacaaccgtgacaaccgctctgag
aatagcgaaggccgtgagcaacgcgaagacaaccgtcgcaaccgtcgcgagaaacagcag
tcgaatgttgaagatcgtgaaattcgccagcaggcgggcgatgagactgagaagagcaaa
cagcgtgacgaccagcagccgcgccgtgaacgcagccgtcgccgtaacgacgagaagcgt
caggcacagcaggaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggc
gagcaggaagagcgcactcaggtaatgccgcgtcgtaagcagcgccagctttctcagaaa
gttcgcttcgcctcagaagtaacagaagagtcagccgttgtcgcagttgaaaccagcgag
agcacaaccggtacgcagttggcgaaagttgatctgccagcggtcgttgaaaacaacgtt
gagcaggatgataacggcgaaaaccgtgataacgccggtatgccgcgccgttcacgccgt
tctccacgtcatctgcgcgtcagcggccagcgccgtcgtcgctatcgtgacgagcgttac
ccgactcagtcgccaatgccgctgaccattgcctgtgcttcgccagaaatggcgtccggc
aaagtctggatccgctacccggttgctcgcccggagcaggttgttgaagaacagcctgta
accgaagaggtgattgcacctgtggcagcggtagaagacgttgtgactgaagcggcaacc
gtggttgaacctcagattgttgaaacggaagcacctcaggcagttgaagtcgaaaccact
catccggaagtgattgccgcgccggttgatgccgcaccgcagcttattgctgaagaagat
gccgtggtggctgaggaaatcgctgaagtggctgaacctgtagccgcagtggaagacacc
gctgaaaccctggttgaaaccaccactgaagaagtcgttcaggacgttgagattgaggtt
gaaccggttgttgaagaaccgaaagcgcctgaggtgaaacctgagccggttgtttctgca
ccagccgcagcccacgtggcgacagcaccaatgacgcgcgccccggcgccggattacgtg
cctgaagccccgcgtcacagcgactgggtacgcccggaattcaacttcgaaggtaaaggc
gctgcaggcggccatagtgcaacgcatcaggcgactgcaccggcaacgcgtccgcagtct
gtcgaataa
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