Enterobacter dykesii: F0320_08025
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Entry
F0320_08025 CDS
T10162
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
edy Enterobacter dykesii
Pathway
edy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
edy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0320_08025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
edy03400
]
F0320_08025 (mfd)
Enzymes [BR:
edy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0320_08025 (mfd)
DNA repair and recombination proteins [BR:
edy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F0320_08025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XBN41330
UniProt:
A0AAU7J5V6
LinkDB
All DBs
Position
complement(1694411..1697857)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGVGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFGEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcggcgtgcgccacgctggtggcggaaatcgccgagcgtcacccaggc
ccggtaattctggttgccccggatatgcaaaacgccctgcgcctgcacgacgaaattcgc
cagttcaccgatagcctggtgttcagcctggccgactgggagacgctgccctatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctatcagctgccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctacctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctgtcccgtgacgcc
ctgcgcgcgcagctcgacggtgtcggctatcgccacgtcgaccaggtgatggagcacggg
gaatacgcgacccgcggcgcgctgctcgacctttacccgatgggcagcgaccagccgtat
cgtctggatttctttgatgatgaaatcgacagcctgcgcgtattcgacgccgacacgcag
cgcacgctggaggaagtggagtccatcaatttactgcccgcgcatgagttccccacggac
aaaaccgctatcgagctgttccgcagccagtggcgcgataggttcgaggtgaagcgcgac
gcggaacatatttatcagcaggtcagcaaaggcacgctgcctgccgggatcgaatactgg
cagccgctgttcttcaacgagccgctgcctgccctgttcagctacttcccggcgaatacg
ctgattgttaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacccgc
gcccgtttcgaaaatcgcggcgttgacccgatgcgtccgctgctgccaccggaagcgctg
tggctgcgcaccgacgagctcaacgccgagctgaagcgctggccgcgcatgcagctgaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgttcaggcgcagcagaagtccccgctggataatctgcgcaagttcctcgagtcc
tttaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcgttaggtgag
ctgctgggacgcattaaggtagcgccgaagcgcatcctgcgtctgagcgaagcgaccgga
aacggtcgttacctgatgattggcgccgccgagcacgggttcatcgacacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggtgagcgcgtcgcgcgccgccgtcaggac
agccgtcggaccatcaacccggacacgctgatccgtaacctggccgagctgcacccgggc
cagccgattgttcacctggaacacggcgttgggcgctatcaggggatgaccacgctggaa
gcgggcggcattaaaggtgaatacctgatgctgacctacgccaacgacgccaaactgtat
gttccggtctcctccctgcatctgatcagccgctacgcgggcggtgccgaagagaatgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgcgcgcgccagaaggcggcggaaaaa
gtgcgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggccaaacagggc
ttcgcctttaagcacgataaagaacagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggccatcaacgccgtgctgagcgacatgtgccagccgctg
gcaatggaccgcttagtctgcggggacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgccttccttgcagtggaaaacaacaagcaggtggcggtgctggtgccgaccaccctg
ctcgctcagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgcatc
gagatgctgtcgcgttttcgcagcaccaaagagcagacgcagatcctcgaacaggccagc
gagggcaaaatcgatattctgatcggcacccacaagctgctgcaaagcgacgtgaagtgg
aaagatttggggctgctgatcgtcgatgaagagcaccgcttcggggtgcgtcataaagag
cgcatcaaagcgatgcgcgccgacgtcgatatcctgaccctgaccgcgacgccgatcccg
cgaaccctaaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgccgtctggcggtgaaaaccttcgtccgcgagtacgataatctggtggtgcgggaa
gctattctgcgtgaagtgctgcgcggaggtcaggtctactatctctataatgatgtggaa
aacatccagaaagcggcggacaggctggcggagctggtgccggaagcacgcatcgctatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtgatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcaccaccatcattgaaaccgggatcgacattccgacggcg
aacaccatcatcattgagcgtgcggatcactttggtctggctcagcttcaccagctgcgc
ggccgcgtcgggcgttcgcaccatcaggcatacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctcggc
gcaggctttgcgctggccacgcacgatctcgagatccgcggtgccggcgagctgctgggt
gaagaccagagcggctccatggagaccattggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggttgagctgcgtatgccttccctgctgccggacgatttcattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagcgcgaagaaggagaatgagctggaa
gagattaaggtggagctgatcgaccgctttggcctgctgcccgatgcggcgcgaaatctg
ctggatatcgcgaggctgcgccagcaggcgcaaaagctggggatccgcaagctcgaaggc
aatgaaaaaggcggcgtgattgaattcggcgagaagaatcacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcatttccgtctggatggtccaacccgtctgaaa
tttacccaggagctgacggagcgcaaaacccgtatggactgggtgcgtaactttatgcgc
cagctggaagagaacgcgatcgcataa
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integrated database retrieval system
