Enterobacter ludwigii EcWSU1: EcWSU1_01708
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Entry
EcWSU1_01708 CDS
T01652
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eec
Enterobacter ludwigii EcWSU1
Pathway
eec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EcWSU1_01708 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eec03400
]
EcWSU1_01708 (mfd)
Enzymes [BR:
eec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EcWSU1_01708 (mfd)
DNA repair and recombination proteins [BR:
eec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EcWSU1_01708 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEW73147
UniProt:
G8LJM7
LinkDB
All DBs
Position
complement(1774983..1778480)
Genome browser
AA seq
1165 aa
AA seq
DB search
MICPNTVGISPRDSDIAMPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVV
LVAPDMQNALRLHDEIRQFTDNLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQR
GVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYA
TRGALLDLYPMGSDQPYRLDFFDDEIDSLRVFDADTQRTLEEVDSINLLPAHEFPTDKTA
IELFRSQWRDRFDVKRDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIV
NTGDIDASASRFESETRARFENRGVDPMRPLLPPEVLWLRTDELNAELKRWPRMQLKTDS
LADKAANTNLAFRTLPDLSVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLG
RIKIAPKRILRLSEATGNGRYLMIGSAEHGFVDTLNNLALICESDLLGERVARRRQDSRR
TINPDTLIRNLAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPV
SSLHLISRYAGGAEDHAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAF
RHDKQQYQMFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF
LAVENNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQSQILEQASEGK
IDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTL
NMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQ
KAADRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI
IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF
ALATHDLEIRGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE
VELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELDEIKVELIDRFGLLPDAARNLLDI
ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQ
ELTDRKNRMEWVRHFMRQLEENAVA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
gtgatatgccccaatactgttggtatatccccaagagactctgacatagccatgcctgaa
cactatcgatattccttgcctgtcaaagcgggcgatcagcgccagctgggcgaacttact
ggcgcggcgtgcgccacgctggtggcagaaatcgctgagcggcacccgggtccggtggta
ctggttgccccagatatgcaaaatgccctgcgtctgcatgatgaaattcgccagttcact
gacaatctggtgttcagtctggccgactgggaaacgctgccgtatgacagtttctcgccg
caccaggagatcatctcctctcgtctgtcgaccctgtatcagttaccgacgatgcagcgc
ggcgtgctgatcgtccccgtaaacacccttatgcagcgcgtctgtccgcacagctatctt
catggccatgcgctggtgatgaaaaaaggccagcgcctgtcccgggacgccctgcgcgcg
cagctcgacagcgccggttatcgccatgtcgatcaggtgatggagcacggggaatatgcc
acgcgtggtgcactgctcgatctttacccgatgggcagcgaccagccgtatcgtctggat
ttcttcgatgatgaaatcgacagcctgcgcgtattcgacgccgacacgcagcgcacgctg
gaagaagtggactccatcaatttactgcccgcacatgagttcccgacagacaaaaccgca
atcgagctgttccgcagccagtggcgcgacagattcgacgtcaaacgcgatgccgaacat
atctatcagcaggtcagcaaagggacgttgccggcgggtattgaatactggcagccgctg
ttctttaacgagcctctgcccgcgctgttcagctatttcccggccaatacgctgattgtt
aacaccggtgatatcgacgccagcgccagccgttttgagagcgaaacccgcgcccgcttt
gaaaaccggggcgtggacccgatgcgtccgctgttgccaccggaggtgctgtggctgcgc
actgatgagctgaacgccgagctgaaacgctggccgcgtatgcagctcaaaaccgattcg
ctcgccgacaaggccgccaataccaacctcgccttccgcacgctaccggatttatccgtt
caggcgcagcagaagtcgccgctggataatctgcgcaagttcctcgaatcctttaccggg
ccggtcgtgttctccgttgaaagcgaaggccgccgggaagcgctgggtgaactgctgggg
cggatcaaaattgccccgaaacgtattttgcgcctgagtgaagccaccggtaatggccgt
tatctgatgattggctccgccgagcacgggtttgtggataccctcaacaatctggcgctg
atttgcgaaagcgacctgctgggggaacgcgtggcgcgccgccgtcaggacagccgtcgc
accattaatccggacacgttgatccgtaacctcgccgaactgcaccccggccagccgatt
gttcacctcgagcacggggttggccgttatcagggcatgacgacgctggaagccggtggc
atcaagggcgaatacctgatgctgacctacgccaatgacgccaaactctatgtgccggtc
tcctcactgcatctcatcagccgctatgctggcggtgcagaagatcatgcgccattacat
aaactgggcggcgacgcctgggcgcgcgcgcggcagaaagccgcggaaaaagtgcgtgat
gtggcggcagaactgctggatatctacgcccaacgcgcggccaaagaaggctttgccttc
aggcatgataaacaacagtaccagatgttctgcgatagcttcccgtttgaaaccacgccg
gatcaggcccaggccattaatgctgtgctgagcgacatgtgccagccgctggcgatggac
aggctggtttgcggcgatgtcggcttcggcaaaaccgaagtggcgatgcgcgccgccttc
ctcgcggtagaaaacaacaaacaggtcgcggtgctggtgcctaccaccctgctcgcccag
cagcattttgacaacttccgtgaccgtttcgccaactggccggttcgtattgagatgctg
tcacgttttcgcagtaccaaagagcagtcgcagattctggaacaggccagcgagggtaag
atcgatattctgatcggcacccacaagctgctgcagagtgatgtgaagtggaaagatctg
gggctgttgatcgtcgatgaagaacaccgcttcggggtccgtcataaagagcgtattaaa
gcgatgcgtgccgacgtcgatatcctcaccctgaccgccacaccgattccgcgaacgctg
aatatggcgatgagcggcatgcgcgacctgtcgattatcgccacgccgccggcacgtcgt
ctggcggtaaaaacctttgttcgtgagtacgacaacctggtcgtccgcgaggctattctg
cgtgaagtactgcgcggggggcaggtctattatctctataacgacgtggagaatatccag
aaagcggcggacaggctggcagaactggtgccggaagcgcgcatcgctatcggtcacggt
caaatgcgcgagcgcgagctggagcgggtgatgaacgatttccaccaccagcgctttaac
gtcctggtgtgtaccaccatcattgagaccgggatcgatattccgacggccaataccatc
attattgagcgcgcggatcactttggactggcgcagcttcaccagctgcgtggccgcgtt
ggccgctcgcaccatcaggcctacgcctggctgctgaccccgcatccgaaagcgatgacc
accgatgcgcaaaaacgtctggaggctatcgcatcgctggaagatctgggcgcgggcttc
gcgctggcgacacacgaccttgagatccgcggtgcaggtgaacttctgggcgaagaccag
agcggctcgatggaaaccatcggcttctcgctctatatggagctgctggaaaatgcggtc
gatgccctgaaggccggacgtgagccatcgctggaagatctgaccagccagcaaactgag
gtggaactgcgcatgccttccctgctaccggatgattttattccggatgtgaacacacgt
ctgtcgttctacaaacgtatcgccagtgcgaaaaatgagaacgaactggatgaaattaaa
gtagagctgatcgatcgctttggcctgttgccggatgccgcgagaaacctgctggatatt
gcgaggctgcgccagcaggcacagaagctgggcattcgtaagctcgaaggcaatgaaaaa
ggtggcgtgattgaatttgccgagaagaatcacgttaatccgatgtggctaatcggtctg
ctccagaaacagccgcagcatttccgtctggatggtccaacgcgtctgaaatttacgcag
gagctgacggatcgtaaaaaccggatggagtgggttcgtcactttatgcgtcagctggaa
gagaacgctgtcgcataa
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