Electrophorus electricus (electric eel): 113574298
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Entry
113574298 CDS
T05787
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
eee
Electrophorus electricus (electric eel)
Pathway
eee04510
Focal adhesion
eee04512
ECM-receptor interaction
eee04518
Integrin signaling
eee04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113574298
04518 Integrin signaling
113574298
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113574298
09142 Cell motility
04820 Cytoskeleton in muscle cells
113574298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eee00536
]
113574298
Glycosaminoglycan binding proteins [BR:
eee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113574298
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113574298
NCBI-ProteinID:
XP_026860911
UniProt:
A0A4W4E911
LinkDB
All DBs
Position
Unknown
AA seq
1450 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVVRGQGEDDSLFSSCTLEGQSYNDKDVWKPEPCRICVCDSGT
VLCDEVICEDMEDCANPEIPDGECCPICPDGFIDPEGPDHSQVDGPQGDPGPKGDPGPEG
PPGNDGIPGEPGLPGPPGPPGPPGLGGNYLPQISYGSEKSSGPSVPGPPGPMGPRGPPGP
GGSPGPQGFTGPSGEPGEPGAPGPMGPRGPSGPHGKNGDDGEAGKPGRPGERGPAGPQGA
RGFPGTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEAGSPGENGAAGVMGPRGLPGERGR
PGPAGPSGARGNDGNSGPAGPTGPTGPSGPPGFPGGAGIKGETGPAGGRGSEGPQGARGE
PGNPGPAGPAGTAGPPGADGQPGGKGSPGAVGIAGAPGFPGSRGPAGPTGPGGAPGPKGN
TGDTGAQGPKGEPGPKGEPGPSGPQGLAGPAGEEGKRGARGEPGGAGPVGPPGARGAPGN
RGFPGSDGAPGSKGAPGERGPNGPAGAQGATGESGRPGEPGLPGSKGMTGAPGAPGPDGK
TGPSGASGHDGASGPPGPAGSRGAPGVMGFPGPKGSDGDSGKPGERGIVGPPGAIGAPGK
DGDIGAPGAPGPAGPAGEKGEQGAAGPPGFQGLPGAQGATGEAGKPGEQGLPGDVGAHGP
SGSRGDRGLPGERGAPGPAGPIGPRGSPGPAGNDGARGEPGAAGTGGPVGAPGMQGMPGE
RGAGGMPGPRGERGDGGPKGPDGAPGKDGLRGMTGPIGSSGPPGSHGEKGEPGGVGPSGV
TGARGAPGERGEVGPPGPAGFAGPPGAAGQPGNKGETGDTGPKGDAGPPGTAGPVGAAGP
QGPAGATGSKGVRGGAGPPGAAGFPGAAGRVGPPGPAGTSGPPGPTGPAGKEGQRGARGE
KGAPGRSGETGAAGPPGPSGEKGSVGPDGPPGPAGLSGPPGVIGVNGIVGLPGQRGERGF
PGLPGPSGEPGKQGSGGPLGERGPPGPMGPPGLSGAPGEAGREGNSGHDGAPGRDGAPGP
KGDRGEAGHSGSPGAPGPPGPPGPMGPSGKPGDRGEAGSAGLAGPAGPAGARGALGPAGP
RGDKGEAGETGDRGMKGHRGFSGMSGMPGPAGPPGESGPAGPSGPAGPRGPSGSSGVPGK
DGMNGIPGPVGPPGPRGRSGEMGPAGSPGFPGPPGPPGPPGIGEAFPIIPQQEKAADPLR
SGYRADDASVRDRDAEVDTTLKSLSQKIEKIRSPDGTQKNPTRMCRDLKMYQPEWKSGSY
WVDPNQGSPLDAIKVFCNMQTGETCIYPSRGSIPLKNWYLIKNAREKKHIWFGESMNGGF
QFQYGGEAADPEDVNIQMTFMRLMSNKASQNITYHCKNSIAYMDQATGNLKKALLLQGPN
DVEIRAEGNSRSTYTVSEDGCTSHTGTWGKTVIDYQTTKTSRLPIIDIAPMDIGAPDQEF
GIEIGPVCFL
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagggctgttgcttgcagcagcagtcctcgtggtg
agaggacaaggcgaggatgacagtttattcagcagctgtacattagaaggccagtcgtac
aatgacaaggatgtatggaaacctgagccatgccggatttgcgtctgtgacagcggaact
gttttgtgcgacgaggtcatctgcgaagacatggaagactgcgccaatccagaaattccc
gatggagaatgctgccctatctgtcccgacggtttcattgatccagaggggcctgaccat
tctcaggttgatggaccccagggagatcctggacctaagggtgacccaggtcctgaaggg
cctcccggtaacgatggcattcctggagagcccggacttcccgggccccctggcccccct
ggcccccctggccttggtggaaactacttgccccagatctcctacggcagtgagaagtcc
agtggcccatctgttcccggacccccaggcccaatgggtccccgtggccctcctggaccc
ggaggttctccaggtcctcaggggttcactggaccctcaggcgagcctggtgagcccggt
gctcctggtcccatgggtcctcgtggtccctctggtcctcacggaaagaatggagatgac
ggtgaagctggcaaacctggtcgtcctggtgagcgtggacctgctggccctcagggagcc
cgtggattccctggtactccaggactacctggcatcaagggacacagaggtttctctggt
ctagatggagctaagggagacagtggccctgcaggacctaagggagaagctggatcgcct
ggtgagaatggtgctgctggtgttatgggacctcgcggtctgcctggtgagagaggccgc
cctggacctgctggtcctagtggtgctcgtggtaacgatggcaactctggtcccgctgga
ccaactggacccactggaccatctggtccacctggattccctggtggtgctggaattaag
ggtgagactggccccgctggaggtcgtggctcagagggacctcagggagcccgtggagag
cctggtaaccctggacctgcaggacctgccggaactgctggtccacctggtgctgatggc
cagcctggtggcaagggttctcctggtgctgttggtattgctggagctcctggtttccca
ggatcccgcggacccgccggacccaccggccctggtggtgcacctggtcccaaagggaac
actggtgatactggtgcccaaggccccaaaggagagcctggtcccaagggagagcctggc
ccatctggacctcaaggtcttgctggacctgctggtgaggagggtaagagaggtgctcgt
ggtgagcctggcggtgctggacctgttggaccccctggagctcgtggtgctcccggcaac
cgtggattccctggcagtgacggtgctccaggctccaagggtgcccctggtgagcgtggt
cccaacggacctgctggagctcagggagccacaggagaatctggtcgccctggagagcct
ggacttcctggatccaagggtatgactggtgcccctggtgcccctggacctgacggcaaa
actggaccttctggtgcctctggtcatgatggtgcttctgggccccctggtcctgctgga
tctcgtggtgcacctggagtgatgggattccccggacccaagggatctgatggtgatagt
ggaaagcctggtgagagaggcattgttggaccccctggtgctattggagcccctggtaaa
gatggtgatattggtgctcctggcgctcctggacctgctggaccagctggagagaaggga
gagcaaggagccgctggtcctcctggattccagggtctgcctggagctcaaggtgctact
ggtgaggctggcaaacccggtgagcagggtctgcctggtgatgttggtgcccatggacct
tctggttccagaggtgacagaggtctccctggtgagcgcggagccccaggtcctgctggc
cccattggccctcgtggttctcctggacctgctggaaatgatggtgctaggggagagcct
ggagcagctggcactggtggtcctgtgggtgctcctggtatgcagggtatgcctggagag
cgtggtgctggtggtatgccaggcccaagaggagaaagaggtgatggtggacctaaaggc
cctgatggtgcacccggtaaggatggcctccgtggcatgactggccctatcggatcttct
ggacctcctggttctcatggtgaaaagggagagcctggtggtgttggaccttcaggagtg
acgggagctcgtggtgcccctggtgaacgtggtgaggttggtccccctggacctgctgga
tttgctggacctcctggtgcagctggtcagcctggaaataagggtgagactggagacact
ggacccaaaggtgatgctggacctcctggcactgctggacctgttggggctgctggacct
cagggccctgctggtgctacaggatctaagggtgttcgtggtggtgctggacctcctggt
gctgctggtttccctggtgctgctggtagagttggacctcctggtcctgctggtacttct
ggacctcctggtcctactggtcctgctggcaaagagggacaaaggggtgctcgtggtgag
aagggggcacctggtcgctccggtgagactggtgctgctggacccccaggaccctctgga
gagaaaggttcagtcggccctgatggaccgcctggtcctgctggtctttctggacctcct
ggcgtgattggagttaatggtattgtgggtcttcctggacaaagaggagaaaggggcttc
ccaggtctcccagggccatctggagagccaggtaagcagggatctggcggacccctcggt
gaacgtggacctcctggccccatgggtcctcctggtctgtctggagctcctggtgaggct
ggtcgtgagggtaactcaggtcatgatggtgcccccggtcgtgatggtgcccctggccct
aagggagatcgtggtgaggctggacattctggatctcctggagcccctggacctcctgga
cctcctggtcccatgggcccatctggcaagcctggagatcgtggagaggctggttccgca
ggtctcgctggccctgctggtcctgctggagcacgtggtgcccttggccctgctggtcct
cgtggagacaagggtgaggctggagagactggagatagaggcatgaagggacaccgtggc
ttctctggaatgtctggaatgcccggacctgctggcccccctggtgaatcaggacctgct
ggaccttctggccctgctggacctcgtggaccctctggctccagtggtgttcctggtaag
gatggcatgaacggtatccctggaccagttggacctcctggacctcgtggtcgctctgga
gagatgggacctgcaggttcccctggctttcccggacctccaggacctcctggacctcct
ggcatcggcgaggccttccccatcatcccccagcaggagaaggctgctgatcctctgcgc
tctggctacagggctgatgacgctagtgtgcgtgaccgtgatgccgaggtggacaccacc
cttaagtccctcagccagaagatcgagaaaatccgtagccctgatggaacccagaagaat
ccaacccgcatgtgccgtgacctcaagatgtatcaaccagagtggaagagtggctcctac
tgggtggaccccaaccagggctctcctctggatgccatcaaggtcttctgcaacatgcag
accggagaaacctgcatctatccatctcgtggcagcattcctctgaagaactggtacctt
attaagaatgctcgggagaagaagcacatctggttcggagagtccatgaatgggggcttc
cagttccagtatggtggggaggctgctgatcccgaggacgtcaacatccagatgacattc
atgcgcctgatgtccaacaaggcctctcagaacatcacctaccactgcaagaacagcatt
gcctacatggaccaggccaccggcaacctgaagaaggctctgctcctgcagggccccaac
gacgtggaaatccgggccgagggtaacagccgctccacctacacagtcagcgaggatggc
tgcacgtcacacactggcacttggggcaagacagtcattgactatcagacaacgaaaaca
tctcgtcttcccatcattgacatcgctcctatggacattggtgctcctgatcaggaattc
ggcatagaaattggcccagtttgcttcttgtaa
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integrated database retrieval system
