Electrophorus electricus (electric eel): 113574638
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Entry
113574638 CDS
T05787
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
eee
Electrophorus electricus (electric eel)
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
eee04147
]
113574638 (col18a1)
00535 Proteoglycans [BR:
eee00535
]
113574638 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
eee00536
]
113574638 (col18a1)
Exosome [BR:
eee04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113574638 (col18a1)
Proteoglycans [BR:
eee00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
113574638 (col18a1)
Glycosaminoglycan binding proteins [BR:
eee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113574638 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
113574638
NCBI-ProteinID:
XP_026861492
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MGNDGGSGTGHEGSALDGEPVAEVVASSGLEAVLGSGSRPWPLLGSSVSPRSGSAFTPTS
VSPLWKKQEVSPSRVVEEHVSDFAEDIEQETSLTKVDLSQMDKHNMVNDSLSGNLIKSQF
NISMRVSSERVNSSYRNTSSSNSSAWHSDHNSTQYSLKYSVSGDSLTARSSRVFTVSAVS
PVSPASPAPVESQRCVPVNSDLPFCGGRGAESFAVPNFLNQSSAEEVRALLGEWAWLLRS
GCHHGAPWFFCLLVTPRCGTPGRPAPLPCRSFCELLADSCWMLLQGRRLPVECSALPEES
DAGYPCLSVSTQKEVNSISLLQLVGEPLPEGVTKTSDNSPGYVFSTNSKTGQLAHAYLPN
PFFHDFSLLFNVKSTSKKAGIIFSITDSYQKIMYVGVKLTAMQGKKQNIVLFYTEPDSQT
SYEAASFSVPSLVGSWTRFSISVFEEQVSLYLNCDSDPQVVRFERSPDEMELEDGAGIFI
GQAGGADPDKFVGIIGDLKVIGDPRAAERHCEEDEDDSDAASGDDGSGYNEMPTVSTTPS
LRPIQEPPLTHKIQNLPETAKDQRQISGSTDGSRQISGTSPDSQQTSSSALYPGKASGSA
DSFRHTSVRRGDGQGVPATVDETLHSASLRPGAHGPRGSGGTQGQKGEKGEKGDKGERGP
QGPKGDAGSKAGPGVDTKGDKGSPGEKGMKGAAGFGFPGPKGEPGLPGPPGPPGLPGPIA
SVVERGDGSVVQRVAGPRGPPGPQGPPGPAGPSGTDGEPGDPGEDGKAGVVGPPGFPGIP
GNPGPMGEKGDRGEGHPGPRGPPGPPGPPGTLSRSDRPTFVDMEGSGFMDIEGVRGLPGL
PGPPGPPGPPGLPGPTSAPMSAVLGGFGPPGQPGHNGAPGKPGVSGPPGADGKPGPPGLK
GEKGDTGELGLPGAVGEKGAQGPSGAPGKPGETGLAGLPGPMGPVGPPGPPGPSYRVGFD
DMEGSAVNMFGGVPGVRGPEGIQGPPGVPGLPGKSGLPGPKGERGSEGPPGVEGRPGLDG
FQGQQGPKGDHGEKGERGEPGRDGIGLPGPPGPPGPPGQVISQPSDDGVAGIPGQAGFPG
PVGPKGETGDPGPPGHGIKGEKGEPGLVIGPDGSPLYLGGLASHKGERGPPGPIGPMGPY
GHPGMKGEIGMPGRPGRPGVNGYKGEKGEPGSGAGYGYPGPAGPPGPPGPPGPTLSLDRF
NRYEDNGRYPALKGEKGDRGAPGVPGPPGNFDIYTLKSELKGEHGEPGLKGDKGEPGGSF
YDPRFRGVTSPGPPGIPGLPGPKGDSIRGPPGPQGPPGPPGIGYDGRPGNPGPPGPPGPP
GSPSLPGAYRPTVGIPGPPGPPGPPGLPAQNSGVVILRTHDIILTASSRQPEGSLIYVVE
NSELYIRVRDGLRQVTLGVYKPFYRDLDNEVAAVQPPPVVHYSQGHSASSGAEHFAHSES
ASRPIEPPARQPTEKHVREPPPPAPLDPRYDPRYSSHPDTRYQPQPQPDPRYQPQPDPRY
IPMQPDRYPVTPARRPNLPVHQPEGHMHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQ
ARAAGLKGTFRAFLSSKLQDLYSIVRKSDRHTLPIINLKDQLLFNSWESLFGEGRMKSNT
PIYSFDGRDILRDSAWPEKMIWHGSDGKGHRQMDNYCETWRTADSAVLGLASSLQAGQLL
QQTPRSCSGSYIVLCIENSYITQFKK
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgatgggggttctggaactggtcatgagggctcagccttggatggggagcca
gtggcagaggttgtagccagctctgggttagaggcagtgcttggatctgggtctcgacca
tggcctcttttggggtctagcgttagtccgaggtctgggtctgcatttacacccacctct
gtgtcccctctgtggaaaaaacaggaagtttctccatctagagttgttgaggaacatgtc
agtgattttgcagaggatattgagcaggagacaagtcttaccaaagtggacctctctcag
atggacaagcacaacatggtgaatgatagtctcagtggcaacctcatcaagagccagttt
aacataagcatgcgtgtgtcttctgaaagggtcaacagcagttatagaaacacatctagt
agtaatagctctgcttggcattctgatcataattcgacgcagtattctcttaaatactct
gtctcgggtgattcattaactgccagaagcagccgtgttttcacagtttctgcagtttca
ccagtttcaccagcttcaccagctccagttgagtcccagcgttgcgtgccggtcaactcg
gacctgccattctgcggcgggaggggagcagagagcttcgctgtgcccaacttcctgaac
cagagcagcgcagaggaagtgcgggcactgctgggtgagtgggcatggctcctgcgctca
ggctgccaccacggtgccccctggttcttctgcctgctggtgacgccccgctgcggcacc
cccggccggcctgcaccgctgccctgccgcagcttctgcgagctcctcgccgacagctgc
tggatgctcctgcaggggcgccgcctccctgtggagtgcagtgccctgcccgaggagagc
gatgccggctatccatgcttgtcagttagtacccagaaagaagtgaatagcatctcactc
ctgcagctggtcggtgagcctctccccgaaggtgtcaccaagacttcagacaacagcccc
ggctatgtgttcagtacaaattccaagacgggtcagctggcccacgcatatctgcccaac
ccattcttccatgacttctcactcctcttcaacgtgaagtccacctccaaaaaagctggc
attatcttttccatcaccgactcctaccagaagatcatgtatgtgggggtgaagctgaca
gccatgcagggcaagaagcagaacatcgtacttttttacacagagccagactcccagaca
tcctatgaggcagccagcttcagtgtgccctccttggtgggctcttggacacgtttctcc
atcagcgtgtttgaggagcaggtctccctctaccttaactgcgactcggatccacaggtt
gtccgctttgagcgctccccggatgaaatggagctagaggacggagcagggatcttcatt
ggacaggctggaggtgctgatcctgacaagtttgtgggcattattggagatctgaaagtg
attggagacccccgtgcagcagaacgccactgtgaagaagatgaagatgactctgatgca
gcctcgggtgacgatggaagtggttataacgaaatgccaacagtctcgaccacaccttcc
ttaagacccatccaggagccaccactaacccacaagatacagaatttgccagagacagcc
aaagatcaaaggcaaatttctggttccactgatggcagcaggcaaatctcaggcacatcg
ccagattcacagcaaacttcaagctcagctttgtatcctggcaaggcatcaggctcagca
gatagcttccggcatacatctgtcagaagaggggatggccagggagttcctgccactgtt
gatgagacactccactcagcgtcactaaggccaggagctcacgggccgcgaggctcgggt
ggcacacagggacagaaaggggaaaaaggagagaagggagacaaaggagagcgtggcccc
caggggcccaagggagatgcaggctccaaggcaggaccaggagtagacaccaaaggagac
aaaggtagcccaggagagaaaggaatgaagggtgctgcaggttttggttttcctggacca
aagggtgagccaggactgcctggtccaccaggcccacctggcttgcctgggcccattgcc
agtgtggtggagagaggagatgggtctgtagtacagagggttgcaggacccaggggacca
ccaggaccccaggggcccccaggcccagctggtccttctggcactgatggagaacctggt
gaccctggcgaagatggaaaagcaggtgtagttggacccccaggtttcccgggaatccca
ggtaacccaggaccaatgggagaaaagggtgaccggggggaaggtcacccaggaccaagg
ggaccaccagggcctccagggccccctggaaccctatcccgctcagacagacctacattt
gtggacatggaaggctctggttttatggatatagagggtgtgaggggtttgccaggtttg
ccaggccctcctggccctcccggacctccaggactgccgggtcccactagtgcgccgatg
tctgctgttttgggtggctttgggccacctggtcaacccggacacaacggggctcctggc
aaaccaggggtttctggaccaccaggtgctgatggcaaaccaggcccacctggcctcaaa
ggggagaagggtgacactggcgaacttggcttacctggagcagtgggagaaaagggtgca
caggggccttctggtgctcctggtaaaccaggagagactgggctcgctgggcttccggga
ccaatgggacccgttggaccaccaggccccccggggccaagctatcgagttggctttgat
gacatggagggctctgcagtaaacatgttcggtggtgtacctggcgtcagagggcccgaa
ggcatacagggcccccctggagttccaggtctcccgggcaagtcaggtctgcctggtcct
aagggagaaagaggcagcgaaggacctccgggagtggagggtcgcccagggctcgatggg
tttcaaggacaacagggtcctaaaggtgaccatggagagaaaggagagagaggtgagccg
ggccgagatggtatcggccttccaggcccacccggccctccaggacctccaggacaagtc
atctctcagccttctgatgatggtgtagcaggcatccctggccaagctggattcccaggc
ccagtgggaccaaagggggagacaggggaccctggccccccaggccacggcattaagggt
gagaaaggagaacctggtctggttattggacctgacggaagccctctttacctcggtgga
ctggccagtcacaagggagagaggggacctcctggaccaataggacctatggggccatat
ggacatcctggcatgaagggtgagatcggaatgccaggcaggcctggtcggccaggagtg
aatggatataaaggagaaaaaggtgaaccaggctcaggtgctggatacggctaccctggc
ccagcaggccctccggggccccctggtcccccagggcctaccttgtctctggacaggttc
aatagatatgaagataacggacgctacccagctttgaaaggagagaaaggagatcgtgga
gcccctggtgttccaggaccaccaggcaactttgacatttacactttgaagagcgaacta
aagggtgaacacggggaaccaggactgaaaggcgataaaggagagccaggtggcagcttc
tatgacccgcgcttcagaggtgtgacatcaccaggccctccaggaatccctggacttcct
ggtcctaaaggagattctatcagagggccccctggtccacagggtccaccagggcctcct
ggcattggctatgatggccgtccaggaaaccccggaccaccaggacctccagggcctccc
ggttccccttcactaccgggtgcttacagacctacggttgggattcctggcccccctggt
cccccgggtccacctggcctccctgcccaaaacagtggtgtggtgattttgagaacacat
gatataattctgacagcatcatctagacaaccagagggttcgctcatctacgttgtggag
aacagtgagctctatatcagagtgcgggatggcctcagacaagtcacgcttggagtttat
aagcccttctacagagatttggacaatgaagtggcagcagtgcagccgccaccggtggtg
cactactcccagggccactcagccagtagcggcgcggagcatttcgcccacagcgaatcc
gccagccgacccatcgagcccccggcccggcagcccacagaaaagcatgtgagggagcca
cctccacctgcccccctggacccccgctatgacccccgctactcctcccacccagacact
aggtaccagccccagccccagccggacccgaggtaccagccccagccggacccgaggtac
atccccatgcagccggacaggtaccctgtcacccccgcccgcagacccaacctgcccgtc
caccagcctgagggacatatgcatacatcaggaccagggctgcacctgatcgccctgaac
agccctcaggtgggtaacatgcgggggatccgcggagccgacttcctgtgcttccagcag
gcacgagctgcaggcctgaagggcacattcagggccttcttgtcctccaagctgcaggac
ctctacagcattgtgcgcaagtctgacagacacacgctgcccatcatcaaccttaaggac
caattgctgttcaacagctgggaatccttgtttggagagggcaggatgaagagcaatact
cctatctactcatttgatggtagagatatactgagggacagcgcctggccagagaagatg
atctggcatggctcagatggtaagggtcaccgtcagatggataactactgtgagacgtgg
cggacggcagacagcgctgtgctgggtctggcctcctcgctgcaggccggccagctcctg
cagcagactcccagaagctgctcaggctcctacatagtgctgtgtatcgagaacagctac
atcacacaattcaagaagtaa
DBGET
integrated database retrieval system
