Electrophorus electricus (electric eel): 113581433
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Entry
113581433 CDS
T05787
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
eee
Electrophorus electricus (electric eel)
Pathway
eee04510
Focal adhesion
eee04512
ECM-receptor interaction
eee04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113581433
04518 Integrin signaling
113581433
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113581433
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eee00536
]
113581433
Glycosaminoglycan binding proteins [BR:
eee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113581433
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113581433
NCBI-ProteinID:
XP_026872374
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MYRFLDSRTVLLCLAAHIVLLAVVKCQEESDQDAGSCTQDGQHYSDKDVWKPEPCRICVC
DMGTILCDEIVCEELRDCPKPEIPFGECCPICAPDQPAYSGVPGAKGQKGDPGDITDVIG
PRGPAGPMGPPGEQGPHGKRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGSTGSPGPQGFQGNPGEPGESGGSG
SMGPRGPPGPPGKPGDDGEAGKPGKSGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
PKGETGAVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGSSGPTGARGNDGLPGPSGPPG
PVGPAGSTGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGISGNSGTDGMPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGVPGFKGDAGPKGEIGRAG
PQGVLGPAGEEGKRGPRGEPGASGPPGPPGERGTPGNRGFPGQDGLAGPKGAPGERGLAG
VSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPSGPQGARG
QPGVMGFPGPKGATGDGGKPGDKGLPGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQG
QPGPPGFQGLPGPPGSPGEGGKPGDQGVPGEAGLAGITGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAVGPAGTPGAQGPPGLQGMPGERGPSGVPGPKGDRGDNGDKGPEG
AAGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGPAGARGAPGDRGETGPPGAAGFAG
PPGADGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVYGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPPGPAGPPGKDGPKGVRGDGGPPGRQGDSGLRGPAGPPGEKG
EPGEDGPPGPDGPGGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKEGTPGGPGDRG
PPGPVGPPGLTGPSGEAGREGNPGSDGPPGRDGAPGVKGDRGETGSAGPPGAPGAPGVSG
PVGPTGKQGNRGEAGPQGPTGPPGPAGVRGMAGPQGPRGDKGESGESGERGQKGHRGFTG
LQGLPGPPGQAGDQGAVGPTGPSGARGPPGPVGPSGKDGSNGLPGPIGPPGPRGRSGETG
PAGPPGNPGPPGLPGPPGPGIDMSAFAGLSHLEKAPDPLRYMRADQAAGGTRQHDAEVDA
TLKSLNNQIESIRSPDGTKKNPARTCRDLRMCHPDWTSGEYWIDPNQGCTIDAMKVFCNM
ETGETCVHSKPDKIPRKNWWSSKSSHRKHVWFGETMNGGVHFSYGDDNLTPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDQSTGNLKKALILQGSNDMEIRAEGNSRFRYSVLEDS
CMSHTGQWGKTVIEYKSQKTSRLPIVDIAPLDVGGANQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgctttctggattcgaggactgtactgttatgtttggcagcacatattgtgctt
ttagcggttgtcaaatgtcaagaagaaagtgatcaggatgcaggtagctgtacacaagat
ggccagcactatagtgataaggatgtgtggaaaccagagccatgtcgcatttgtgtgtgt
gacatgggcacaatcctgtgcgatgagatcgtctgtgaagagctcagggactgccccaaa
ccagagatcccatttggagagtgctgccccatctgtgctcctgatcaacctgcttatagt
ggagtgccaggtgctaaggggcagaaaggagacccaggagacatcacagatgtcattggt
cccagaggaccagcaggtcccatgggacctccaggagagcaaggaccccatggaaagaga
ggcgagaaaggagaaaaggggagccctggaccccgaggcagagatggtgagcctggaacg
cctggaaatcctggtccaccgggacccccaggacctaacggccctcctggcctcggaggg
aactttgcatcacagatggctggtggatttgatgacaaagcaggaggtgcacaaatgggt
gtgatgcagggacctatgggccctatgggtcccagaggaccacctggctcaactggatca
cctggtccgcagggtttccaaggcaaccccggagagcctggagaatctggtggctctggc
tctatgggtccccgtggtccccctggtccccccggcaaacctggagatgatggtgaagcg
ggtaagccgggcaagtctggtgatcgcggcccttctggaccacagggagcgcgtgggttt
cctggaactcctggtctacctggaatcaaaggacacagaggttatccaggtcttgatgga
ccaaagggagagacgggagctgttggttctaagggagaggcaggtgctcctggtgaaagt
ggagctccagggccaatgggtccgcgtggtctgcccggagaacgaggacgtccaggttct
tctggacctacgggagctcgtggaaacgatggcttacctggaccttctggtcctcctggt
cctgttggacctgctggatctacaggattccccggttccccaggtgctaagggtgaagct
ggacccactggtgctcgggggcctgagggtgcgcagggaccccgtggagagtcaggaaca
cctggatctcctggaccttctggaatttctggtaactccggtacggatggaatgcctgga
gccaaaggatcagctggagcccctggtatagctggagctcctggatttccaggtccccgt
gggcctcctggacctcaaggagcaactggacccctcggaccaaaagggcagtctggtgat
cctggtgtcccagggttcaagggtgacgctggccccaaaggagagataggccgtgctggt
cctcaaggagtactaggccctgctggagaggagggtaagagagggcccagaggagaacct
ggagcttctggaccacctgggccccctggagagagaggaactcctggtaatcgtggtttc
ccaggacaggatggtttagcaggtcccaagggtgcccctggtgagcgtggccttgctgga
gtatctgggcctaaaggtgccagtggtgatcctggacgccctggtgaacctggtcttcct
ggtgctagaggcctgactggccgtccaggtgatgctggtcctcagggtaaagttggtcca
tctggagctcctggtgaggacggtcgtcctggaccctcggggccccagggtgctcggggt
cagcctggagttatggggttccctggacccaagggtgccactggtgatggggggaagcca
ggggacaaaggacttcctggtgctcctggactacggggcctgcctggtaaagatggtgaa
acaggtgcaggtgggcccccaggtcctgctggacctgctggagagagaggagaacaaggg
cagcctgggcctcctggtttccagggtctgcctggccctccagggtcgcctggcgaggga
gggaaacctggagatcagggagtcccaggagaagctggtcttgcagggatcactggaccc
agaggagagcgtggtttcccaggagaacgaggaggcgcaggaccccagggtctacaggga
ccacgtggtcttcctggaactccaggaactgatggacccaagggagctgttggtcctgct
ggaacccctggtgctcaagggccccctggtctgcaaggcatgcccggcgagagaggacct
tccggtgttccaggaccaaagggtgacagaggagacaacggtgacaagggacctgaagga
gctgccggcaaagacggagcacggggtttgactggcccaattggacctcctggccctgct
ggtcccaatggtgagaagggagagtccggacccgcgggaccctctggacctgctggtgct
cgtggtgcccctggtgaccggggtgagacgggtccacctggtgccgccgggttcgctggg
cctcctggtgccgatggtcagcctggtgtcaagggggagcagggggagggtgggcagaaa
ggagacgcaggagcccctggaccacaagggccctctggagctccaggacctcagggacca
actggtgtttatggacctaaaggtgctcgtggtgctcaaggacctcctggagctactgga
ttcccaggagctgctggcagagttgggccaccaggtcccaatggtaatcctggcccgcct
ggtccggctgggcctcctgggaaggacggtcctaagggtgtgcgtggagatggtggtccc
ccaggtagacagggtgactctggcctgcgtggacctgctggtccacctggagaaaaggga
gaacccggggaggatggccctcctggtccagatggcccaggaggtccccagggtcttgct
gggcagcgtggtattgtgggtctgccaggacagcgtggtgaaagaggcttccctggcctt
ccagggccgtctggagagcctgggaaggaggggactccaggaggacctggagatcgcggc
cctcctggacccgtagggccacctggactaacaggtccatcaggagaagctggtagagag
ggcaaccctggatcagatggtcctcctggtcgggacggtgccccgggagttaagggggac
cgcggtgaaactggctcggctgggcctcctggtgcgccaggtgctcctggtgtctcgggg
cctgttggtcccactggcaaacaggggaacagaggagaggctggaccccaaggacccact
ggacctccaggacctgctggagtgagaggaatggctggaccccaaggaccccgtggagat
aaaggagagtccggtgaatctggagagcggggccagaagggtcatagagggttcacaggt
ctccagggtctacctgggcctccaggtcaggctggtgaccagggtgctgtaggacccact
ggaccaagtggagcaaggggaccaccaggccctgttggtccatccggaaaagacggatcc
aatggcctgcctggcccgattggacctcctggaccccgtggtcgctctggagagactgga
ccagctggtccccctggtaatcccggaccccctggacttcctgggcctcctggacctgga
atcgatatgtctgcctttgccggtctgtctcatctagagaaggcccctgatccgctgaga
tacatgagagctgaccaggcggcaggaggcaccaggcagcatgacgcagaggtggatgct
accctcaagtccctaaataaccagatcgagagtatacgtagccccgatggcaccaagaag
aaccctgcacgcacctgcagagacctcaggatgtgccacccagactggacaagcggagag
tattggatcgatcctaaccagggctgcaccattgatgccatgaaggtcttctgcaacatg
gaaactggtgaaacttgtgtccactccaaacctgacaaaatcccacgcaagaactggtgg
agcagcaagagcagccaccgcaaacacgtctggtttggggagaccatgaatggtggagtc
cattttagctatggtgacgacaacttgactcctaacactgccagcatccagatgactttc
ctgaggctgttgtccacagaggcctcacagaacctcacgtatcactgcaaaaatagtgtg
gcttacatggaccagagcacaggcaacctgaagaaggctctgattttgcaaggttccaac
gacatggagatcagagccgaaggcaacagccgcttcagatacagtgtgctggaggacagc
tgcatgagtcacacagggcagtggggcaaaacggtgattgagtacaagtctcagaagacc
tcccgcctgcccattgtggatattgcccctctggacgttggtggggctaatcaggaattt
ggcgttgatgttggtgcagtctgctttttataa
DBGET
integrated database retrieval system
