KEGG   Electrophorus electricus (electric eel): 113581860
Entry
113581860         CDS       T05787                                 
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
eee  Electrophorus electricus (electric eel)
Pathway
eee03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eee00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113581860 (xab2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eee03019]
    113581860 (xab2)
   03041 Spliceosome [BR:eee03041]
    113581860 (xab2)
Messenger RNA biogenesis [BR:eee03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     113581860 (xab2)
Spliceosome [BR:eee03041]
 Complex B
  Other components
   Prp19-related factors
    113581860 (xab2)
 Complex C
    113581860 (xab2)
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_19 TPR_2 TPR_8 TPR_12 TPR_15 ARM_TT21_C TPR_16 ARM_TT21 NRDE-2 RPN7 TPR_1 Tcf25 DUF4515 LTN1_E3_ligase_6th DUF7041
Other DBs
NCBI-GeneID: 113581860
NCBI-ProteinID: XP_026873106
LinkDB
Position
Unknown
AA seq 849 aa
MPVLNAKPDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNGPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEINNCHERALVFMHKMPRIWLDYCQFMVSQRK
ITRSRRTFDRALRALPITQHSRIWPLYLTFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLGAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGNDEDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPVKATGKPHSLWVAFARFYEDNDQLDDARTIFEKATKVH
YKQVDDLAAVWCEYGEMELRYENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHSYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVEAEERHYMFNIYIKRAAEIYGVTHTRSIYQKAIEVLPDEHAR
DMCLRFADLESKLGEIDRARAIYSYCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATSSATGTVSDLAPGQSGVDDMKMLEQKAQLLAAEAEQ
DKPKPKEKILFVRSDASRSELAELAKQANPDEINIDDEEEDEDGDEEPDEVQLEQKSVPT
AVFGGLKDE
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgccggttcttaacgcaaaaccagacgttgtgtttgaagaagatgatttgccatacgaa
gaagaaataatacggaatccatattccgtcaagtgctggatgagatatattgagcacaaa
caaaatggacccaagtccgtacttaatatgatatacgaacgagcgcttaaagagttgcct
ggcagttacaagttgtggtacaactatctgagagagaggaggaagcaagttaaaggaaaa
tgcgtaacagatccagcatatgaagagatcaataactgccacgagagagcgctggtgttc
atgcacaagatgccgaggatatggctggattactgtcagttcatggtgtcccagcgcaaa
atcacacggagccgtcggacgtttgaccgtgcgctcagggccctgcccattacccagcat
tcccggatttggcccttgtacctcacctttgctcgaaacctacccctgcctgagaccgcc
attcgtgtttaccgcaggtacctcaagctttctccagagaacgcggaggagtacattgat
tatctgcgctccgttggccgtctggatgaagcagcagtccgcttaggggctgtggtcaat
gatgaaaactttgtctcaaaggaggggaagtcaaactaccagctctggcacgagctgtgc
gacctcatctctcagaacccggacaaggtgacctcgttgaacgtgggcgccatcatccgt
ggtgggctcactcgcttcacagaccagttgggcaagctgtggtgctccctggccgattac
tacatccgcagcggccactttgagaaggcgcgggatgtgtacgaggaggcgatccagacg
gtggtcaccgtccgagacttcacgcaggtgtttgacagctacgcccagtttgaggagagc
atgattgctgccaagatggagaccacgtcggagatgggaaatgacgaggacgatgacatc
gacctggagttgcgcttggcgcggttcgagcagctcatcacccggcggccgctcttactg
aacagcgtgctgctgcggcagaacccgcacaacgttcacgagtggcacaagagggtcaaa
ctctacgagggcaaccctcgacagataatcaacacctacacagaggccgtacagacagtg
gaccccgtgaaggccacggggaagccccactccctctgggtcgccttcgccaggttctac
gaggacaacgaccagctggatgatgcccggaccatctttgagaaagccaccaaggttcat
tacaagcaggtggatgacctggccgcagtgtggtgcgaatacggagagatggagctgcgg
tacgagaactacgaccaggccctccgcatcctcaggaaagccactgccatcccgtcaagg
aaagcggagtactttgacgcatcagaaccggtgcagaatcgagtgtacaaatcactgaag
gtctggtctatgctagcagatctggaggagagtctcggcacgttccagtcaacaaaggca
gtgtatgaccgcattatcgacctccgtatcgccacacctcagatcatcattaactatgcc
atgttcctcgaggaacacagttactttgaggagagcttcaaggcgtacgagcgtggcatt
gcgctcttcaggtggcctaacgtctatgacatctggaacacgtacctcaccaagttcatc
gaccgctacggaggcaagaagctggaaagagcacgggacctgtttgagcaggctctggat
gggtgtccggccaagtttgccaaaaccatctacctgctgtacgccaagctggaggaagag
tttggcctagccaggcacgccatggccgtgtacgagagagccacgcaggctgtggaggcc
gaagaacgccattacatgttcaacatctacataaagagggctgcagagatctacggggtc
acccacaccaggtccatctaccagaaagccatcgaggtccttccagatgagcatgcccga
gacatgtgtctgcgctttgctgacctggagagtaaactaggggagatcgaccgggcgagg
gccatctactcctactgctcccagatgtgtgaccccaggatgacggccaatttctggcag
acgtggaaggagtttgagattcgtcatggaaacgaggacacgatccgcgagatgctgcgc
ataaagcgcagcgtccaggcaacctataacacacaagtcaacttcatgtcctcgcagatg
ctcaaagcgaccagcagcgccacaggcacggtgtcagacctggccccgggtcagagtggt
gtggatgatatgaagatgttggaacagaaggcccagctacttgctgcagaggctgaacag
gacaaacccaaacccaaagagaagatcctctttgtcaggagtgacgcgtctcgtagtgaa
cttgcggaactggccaaacaagccaacccagatgaaattaacattgatgatgaggaggag
gatgaagacggggatgaggaaccagacgaggtacagctggagcagaagagcgtccccact
gccgtctttggagggctgaaggatgagtga

DBGET integrated database retrieval system