KEGG   Electrophorus electricus (electric eel): 113588342
Entry
113588342         CDS       T05787                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
eee  Electrophorus electricus (electric eel)
Pathway
eee03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eee00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113588342 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eee03041]
    113588342 (snrnp40)
Spliceosome [BR:eee03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113588342 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    113588342 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_EIPR1 ANAPC4_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Cytochrom_D1 Beta-prop_IFT140_2nd WD40_like Beta-prop_Nup120_160 WDR54 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 113588342
NCBI-ProteinID: XP_026883277
LinkDB
Position
Unknown
AA seq 347 aa
MIEQKKRGADLAIVPAGVKRPRTELIAAAQSQQLATMGPPRSSSLQAPIMLLSGHEGEVY
CSKFHPNGATLASAGYDRLILLWSVYGDCENFATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSEGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGSSDKRIYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaacaaaagaagcgaggcgcagacctggcgattgttcccgctggtgtgaagagg
cccaggaccgagttgattgcagcggcgcagtctcagcaactagccaccatgggcccacct
cgcagctcaagtttgcaagctccaataatgttgctgtctgggcacgagggagaagtctat
tgcagcaagtttcatcctaatggagcaacactagcttctgcaggatatgaccgcctcata
ttgttatggagcgtctatggagactgtgagaactttgccacacttaagggtcacagtgga
gctgtgatggagcttcactacaacacagatggcagcctactcttctcagccagcacggat
aagacggtgtgtgtgtgggacagtgaaacgggtgagcgtgtgaaacgtctgaaaggccac
acatcctttgtgaactcgtgtttccctgcgcgccggggtccgcaactggcctgcaccggc
agtgatgatggaactgtgaagctgtgggacatcagaaagaaagcatctgttcacacattc
cagaacacataccaggttctgagtgtgaccttcaatgacaccagtgaccagatcatctca
ggaggcattgacaatgacatcaaggtttgggacttaaggcagaataaactgatttacagc
atgcaaggacatggagactcagtgacaggtctcagtctgagctcagaggggtcttatcta
ctttccaactccatggataatagtgtgcgggtttgggatatccgtccatttgccccaaag
gagaggtgtgtgaagatattccaaggaaatgtccacaattttgaaaagaatcttttgcgg
tgctcatggtcagcagatgggagtaaaatagcagcaggctccgctgacaggtttgtgtac
atctgggacaccacgtcacgcagaatcctctataaactccctgggcatgcaggatctgtc
aacgaggtagtcttccatcccgaggaacccatcgttctatctggatccagtgacaagcgc
atctacatgggcgagattcagtaa

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