Electrophorus electricus (electric eel): 113590327
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Entry
113590327 CDS
T05787
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
eee
Electrophorus electricus (electric eel)
Pathway
eee03013
Nucleocytoplasmic transport
eee03015
mRNA surveillance pathway
eee03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113590327
09122 Translation
03013 Nucleocytoplasmic transport
113590327
03015 mRNA surveillance pathway
113590327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eee03019
]
113590327
03041 Spliceosome [BR:
eee03041
]
113590327
Enzymes [BR:
eee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113590327
Messenger RNA biogenesis [BR:
eee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113590327
Spliceosome [BR:
eee03041
]
Complex C
Other components
EJC/TREX
113590327
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113590327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
113590327
NCBI-ProteinID:
XP_026886217
UniProt:
A0A4W4GP34
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MTENDVENELLDYEEDDVDAAGGVGDGGLAGDTSAMAMRKEGVKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKRESPHVVVGT
PGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLNDVQDRFEVNIS
ELPEEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacgacgtggagaacgagctgttagactatgaggaggatgacgtggatgca
gcaggtggtgttggggatggagggctcgctggggacaccagtgctatggccatgcggaag
gagggggtcaagggctcctatgtgtccatccactcctccgggttcagggacttccttttg
aagcctgagctcctgagggccattgtggattgtggctttgaacatccatcagaggttcaa
catgagtgcattcctcaggccatcttgagcatggatgttttatgtcaggccaaatctggt
atggggaagacagctgtctttgtgttagctacactacagcaactggagccagtgactgga
caggtatcagtgctggtaatgtgtcatactcgtgagttagcgttccagatcagcaaggaa
tatgagcgcttctccaagtacatgcctactgtcaaggtggcagtgttctttggtggtttg
tccataaagaaggacgaggaggtgttgaagagagagagccctcatgttgtggtgggaacc
ccgggtcggatcctggcactgtcccgtaacaaaagccttaacctacgtcacatcaagcac
ttcatcctggatgagtgtgacaagatgcttgaacaactggacatgcgccgtgacgtccag
gagatttttcgcatgaccccccatgagaagcaggtcatgatgttcagtgccaccctgagc
aaagaaattcgccctgtctgccgaaagttcatgcaagatcctatggaaatttttgtggat
gatgagaccaagctcacactccatggcctacagcagtactatgtcaagttgaaggacaac
gagaagaacaggaagctctttgatttgctggatgtgctggagttcaaccaggtggtgatc
ttcgtaaagtcggtgcagcggtgcattgctctggctcagctgcttgtggagcagaatttc
cctgccatcgccatccacagagccatgccccaggaggagaggctagctcgctatcagcag
tttaaagatttccaaagacggatcctcgtggccactaacctgtttggcagagggatggac
attgagagggtcaacatcgccttcaactatgatatgccggaggattctgacacatatctt
cacagggtggcaagagcaggcagatttgggacaaaaggtttggccatcacgtttgtttcc
gatgaaagcgacgcccgtaccctgaatgatgttcaggacaggtttgaggtgaacatcagt
gagcttccagaggaaatcgacatctcctcctacattgaacaaacacggtaa
DBGET
integrated database retrieval system
