Electrophorus electricus (electric eel): 113590381
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Entry
113590381 CDS
T05787
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
eee
Electrophorus electricus (electric eel)
Pathway
eee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113590381 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eee03019
]
113590381 (mtrex)
03041 Spliceosome [BR:
eee03041
]
113590381 (mtrex)
03009 Ribosome biogenesis [BR:
eee03009
]
113590381 (mtrex)
03016 Transfer RNA biogenesis [BR:
eee03016
]
113590381 (mtrex)
Enzymes [BR:
eee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113590381 (mtrex)
Messenger RNA biogenesis [BR:
eee03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113590381 (mtrex)
Spliceosome [BR:
eee03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113590381 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
113590381 (mtrex)
Ribosome biogenesis [BR:
eee03009
]
Eukaryotic type
Pre-60S particles
Helicases
113590381 (mtrex)
Transfer RNA biogenesis [BR:
eee03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113590381 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
113590381
NCBI-ProteinID:
XP_026886297
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSSKKAAPKIVQTAPQAGKSGGKHVKEKADSPSFVGLKRETD
ADCSEEVVGSKRAKMGTMSAEEINLADLMPRVRVEQVETVEGCTHEVAIPADEEYTQLKP
RVGKAAKEYPFILDPFQREAILCLDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVVFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVV
YTDYRPTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDQGSSSGGGSKWD
PKGRRGGTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALF
ATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVD
EKMSPAVGKQLIKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTVPS
VLEKMKNLEEMYNATEIPNEDNVVTYYKIRQQLAKLAKELEDYMHKPKYCLPFLQPGRLV
KVKKEELDFGWGVVVNFSKKSNVKAGSSELAPLYVVEVLLHCSKESVKNAATEAAKPATP
GERGEMQVVPVLLNLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPV
DDMGIKDPGLKKVIQKVEAFEHRMYTHPLHTDPNLETLYTLCEKKALIAADIKAVKRDLR
KARTVLQMDELKCRKRVLRRLGFATAGDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
TAEQATALLSCFVFQENASEMPKLTEQLAGPLRQMQECAKRIGKVSAEAKLEVDEENYLN
QFRPHLMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFALGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggagacgatctgttcagcgtgtttgacgaggaacagacaagttct
agtaaaaaagcggccccgaagattgtgcagactgcgcctcaggctggaaaatcagggggc
aaacatgtgaaagagaaggcagactctccatcttttgtcgggctgaaacgtgagacagat
gccgactgctcagaggaggtggtgggtagtaagagagccaagatggggaccatgtctgca
gaggagataaatcttgcagacctgatgcccagagtcagggtggagcaggtggagactgtg
gagggctgcactcacgaggtggccatacctgctgatgaggagtacacacaactgaaacca
cgagttggaaaagctgccaaggaatatccctttattctcgatcccttccagagagaggcc
attttatgcctcgacaacaaccagtcggttctggtgtctgctcacacctcagcagggaaa
actgtgtgtgctgagtatgccatcgctcttgctctgagagagaagcagcgtgtgatcttc
accagccccatcaaggctctgagtaatcagaagtatcgggagatgtatgaggagttccag
gacgtgggcctgatgaccggagacgtcaccatcaaccccacggcctcctgcctggtcatg
accactgagatcttgaggagtatgctgtaccgggggtcagaggtcatgcgggaggtcgcc
tgggttgtctttgatgagattcactacatgagggactcagagcgaggtgtggtgtgggag
gagaccatcatcctgcttcctgataatgttcactatgtcttcctgtcggccaccatcccc
aacgcccgccagttcgcagagtggatctgccacctgcacaaacagccctgccatgttgtg
tacacggactaccgccccactcctctgcagcactacgtgtttccagcagggggcgatgga
cttcacctggtcgtggatgagaacggtgaatttagggaggataacttcaacacagccatg
caggtgttgcgggatgcaggagaccagggttcgagcagtggaggcggatccaaatgggac
cccaaaggcaggagaggaggaactaggggtccatccaatgtgttcaagattgtgaagatg
atcatggagaggaacttccagcccgtcatcatcttcagcttcagcaagaaggagtgcgaa
gcgtacgctctgcaggtgtccaagctggacttcaacacagatgaagagaagaaactggtg
gaggaagttttcagtaatgccattgactgtctgtcagacgaagacaagaaactgccacag
gtggagcatgtcctcccactgttgaaacgaggcattgggatccaccatggaggacttctg
cccatcctcaaggagaccatcgagattctcttctccgagggcctcctcaaggcactgttc
gccacggaaacgtttgccatgggcatcaacatgcctgcccggaccgtactcttcaccagc
gcccgcaagtttgacggcaaagacttccgctggatcagctcaggagaatacatccagatg
tccggccgtgccggcagacgaggaatggacgagagaggaatcgttatcttcatggtggac
gagaagatgagcccagcggtggggaagcagctcattaagggttctgctgaccctttgaac
agtgccttccatcttacctacaacatggtcctgaacttgctgcgtgtggaggagattaac
ccagagtacatgttggagaagtccttctaccagttccagcactaccggaccgttcccagt
gtcctggagaagatgaagaatctcgaggagatgtataatgctacagagatccccaatgag
gacaacgtggtgacctactataagatccgacagcagctggccaaactggccaaagaactg
gaggactacatgcacaagcccaagtactgtctacctttcctacagcccggcaggctagtg
aaggttaaaaaggaggagttggattttggatggggagtggtggtgaacttctccaagaaa
tccaatgtgaaggctggtagcagtgagctggcccctctgtatgtggtggaggttctgtta
cactgcagtaaggagagtgtgaagaacgctgctacagaggcagccaagcctgccactccc
ggagagagaggagagatgcaggtggtgcctgtcctgttgaacctcctcacctccatcagc
tccgtcaggctctacatccccaaagacctgcgaccctacgacaaccgacagagcatgctc
aaatccatacaggaggttcagaagcgcttcccggacggcctccctctgctcgacccagtg
gatgacatgggcattaaagaccctggacttaagaaggttattcagaaggtggaggccttt
gaacataggatgtacacccaccctctgcacactgaccccaacctggagaccctctacacc
ctgtgtgagaagaaagcactgatcgcggctgacattaaggcggtgaagcgcgacctgagg
aaggcgcgtactgtgctgcagatggacgagctcaagtgtcgcaagcgtgtgttgcgacgt
ctcggctttgccaccgccggcgacgtcatcgagatgaagggccgcgtggcctgtgagatc
agcagcgcagacgagttgttgctgacagagatgatgtttaatggacttttcaacgatctg
acagcggagcaagccacggctctcctgagctgttttgtattccaggaaaatgctagcgag
atgcctaaactaacagagcagttagctgggccacttcgtcaaatgcaagaatgtgccaaa
cgcatcgggaaggtgtcggccgaggccaagctggaggtggacgaggagaactatctgaac
cagtttcgcccccacctgatggacgtggtgtacacctgggcaaatggcgcctccttctct
caaatctgcaagatgactgatgtctttgaaggcagtattattcgatgtatgcggcgtttg
gaagagctcctcagacagatgtgtcaagcagccaaggccatcggaaacacggagctggag
aataagtttgctctcggaataacgaaaatcaagagggacatcgtgtttgctgccagtctt
tacctgtga
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integrated database retrieval system
