Erysipelothrix enhydrae: LLS04_03245
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Entry
LLS04_03245 CDS
T09930
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eeh
Erysipelothrix enhydrae
Pathway
eeh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LLS04_03245 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eeh03400
]
LLS04_03245 (mfd)
Enzymes [BR:
eeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLS04_03245 (mfd)
DNA repair and recombination proteins [BR:
eeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LLS04_03245 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
UB2H
DUF3801
RecG_dom3_C
NOMO1-like_2nd
Motif
Other DBs
NCBI-ProteinID:
WRB87611
LinkDB
All DBs
Position
complement(637882..641298)
Genome browser
AA seq
1138 aa
AA seq
DB search
MNWLYNYLEKHELVKEYTQGKSIFAHLSVVQEALLVLGSSKISKKPLFIIKENEQQASNL
YNEIKHLDENANVVYYNHEESLRVEAIVQSEIMKANRIDALFKIVNGDFDICITHAIASV
RKLSSAEVLKASIIKIRTGDEWEPFQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSI
QMNQPLRIEFFDVEVDSLRYFDIENQRSLSRVEEATIAFATDILLKENDIEEISNALTHK
IEGIENNDLIHEMEQKRELLQMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIE
RTLKQNDLDSHTFIEEQYEMNQMIYVSDIFESFERIKAKHTYREIFEYQTEGEVFIPWHS
ANIVSESIEQTMKWLRKEAITQKVIITLDEDTMEDFIKTMLQQGVEYQVLTDKPTSNGIY
IDYGHITSGFILEDLNTVVYTANELYKYKKKMFRYDNKFLKAESLSQLSDLDTLDYVVHR
QYGIGKYMGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLSKLG
TSTWQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDTEYQKQFEDAFEYELTHDQK
TAIDEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHA
RTLKARLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLL
IIDEEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNTPPSNRLPV
MTYIIEKNQKTINDIISKELSRDGQVFYLFNNVEQIYSVASVIANHVEEAKVAVVHGQME
RHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQLYQIKGRVGRS
DRLAYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMRDLTIRGAGELLGGNQSGF
IDTVGIDLYVQLLKEAIAKRQGKEVIDVEEQERFNLKVDGYLPEDFTSDDGEKLDPYQQI
NQIQTLDELKHFNEMIDDRYGKLPNSVKMLLEKTRLELFLNDKRIKSFKERVNKVELVFT
EEYSSQVDGVHLFELISEKSSEIKIKYLNQTIIITMPMYTEWAEDLIYILENLKEQQL
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaattggttatataattatttagaaaaacatgaacttgttaaagagtacacccagggc
aaaagcatttttgcccatttaagcgtggttcaagaagcacttttagtcctaggatcaagt
aaaattagtaagaaaccgttattcattattaaggaaaacgaacaacaagcatcaaattta
tataatgagattaaacatcttgatgagaatgcaaatgttgtttattacaatcatgaagaa
tcacttcgagttgaagccattgttcaatcagaaattatgaaagccaatcgaattgacgca
ttatttaaaattgtgaatggtgattttgatatttgtattacgcatgccattgcatctgta
agaaagctgtcttctgcggaggtgcttaaggcatcaatcataaagattaggaccggtgat
gagtgggagccatttcagcttgctcgagaacttgaacgtttaggctatacacgtgttaaa
tatgttgagaaaccatttacgtatgccattcgtggaggggtttgtgatgtgttctcaatc
cagatgaatcaaccgcttcgaattgagttttttgatgtggaggtcgacagtcttcgatat
tttgatattgaaaatcagcgatctttatcaagagttgaagaggcgacgattgcgttcgca
accgatatacttcttaaagaaaatgatatagaagaaattagtaatgcattaactcataaa
atagagggaatcgaaaataatgatttgattcatgaaatggaacagaagcgtgagttacta
caaatgaatcaatttgatgtaacgttgtatcctcttctttctttttggtcaaattatgca
accatctatgattatctcaaagacgcaaacacatatatgagtccaattgaagcgatcgaa
agaacgctcaagcaaaatgatttggattctcacacttttattgaagaacagtatgagatg
aatcagatgatttatgtttcagatatttttgagtcatttgaacgtattaaagcgaaacat
acgtatcgagagattttcgaatatcagactgaaggcgaagtgtttattccttggcattcg
gcaaatatcgtatccgagagtattgaacaaaccatgaaatggcttcgaaaagaagccatc
actcaaaaagtaattatcactctagatgaagatacaatggaagattttattaagacgatg
ctccaacaaggtgttgagtatcaagttttaacggataaaccaacctcaaatggaatctat
attgactatggtcatataacttcaggctttattcttgaggatttaaatacagttgtttat
accgctaacgaattgtacaagtacaagaaaaaaatgttccgctacgataataaattctta
aaagcagaatctttaagtcagctttctgatcttgatacattggattatgttgtccacaga
cagtatggaattggaaaatatatgggaatcacgacaaaagaaattgagggaatccataaa
gatttcatgagaattctttatcgtgatggtgatgagttgtttgtaccactcgaacaattt
aatctcgtgagaaagtttatgtcgcgtgaagcggcatctgtgcgccttagtaagcttgga
acaagtacatggcaaaagaataaagaacggattaaacaagatgtagcggatgtagcagat
aagcttgttacactctactctacaagaatggatgcaagtggatttgctttcagtccggat
acagagtatcaaaagcaatttgaagatgcatttgaatatgaattaactcatgatcagaaa
accgcaattgatgagattaagcgtgatatggaacgagatgttccaatggatcgtttgctt
tgtggtgatgttggttttgggaaaacggaagtcgctattcgagctgcatttaaagctttt
gtagatcataaacaagtagtgttcctttgtccaacaacaatcctttctcaacaacatgct
cgaacactgaaagcacgtctcagtgactttcctgtgaccattgaggttttaaatcgattt
gtatcggataaagaaaaaaatgaaataatccaacgcgtgaaggacggtaaagttgatatt
ttagtaggtacacaccgtgttttatcgcgtgatgttaagtttaaagatctaggactttta
attattgatgaagaacaacgcttcggtgttgagcataaagaacgtattaaggagtttaag
gtgtctgtggatgtattatcgctcagtgcgactccaataccacgaacactccaaatgtct
cttataggactccgtagtttatcacagcttaatactccaccctcaaatcgtcttccagtc
atgacttatattattgagaaaaaccagaaaacgattaatgatattatttctaaggaatta
agccgggatggacaagtgttttacctatttaataatgtagagcaaatatattctgttgct
tcagtcatagccaatcatgttgaagaagcaaaagtagccgtcgtacatggacaaatggaa
cgacacgaaattgaagatgttatgattcgatttataagtaaagagataaatgtactggta
tgtacgacaatcattgaaacaggaattgatattccaaatgcgaatacaattattgttgat
aatgcacatcgttttggtttgtcacagctctatcaaatcaagggtcgtgttggtcgttca
gatcgtctcgcctatgcatactttgttgttcccaacaaacgtggactaacagagttggca
cagaaaagacttcaggccatcaaagaattcactcaacttggtagcggttataagattgcg
atgcgcgatttaaccattcgaggtgctggagaactcttaggtggaaatcaatcagggttt
attgataccgtcggtatcgacttatatgtacaacttcttaaagaagccattgcgaaaaga
caaggtaaagaagtaattgatgttgaagaacaagaacgctttaatctaaaagtggatgga
tatttaccagaagactttaccagtgatgatggtgaaaaattagatccataccaacaaatt
aatcagatacaaacgcttgatgagttaaagcattttaacgagatgatcgatgaccgctat
gggaaattaccgaactctgttaagatgttattagaaaaaacacgtcttgagttgttctta
aacgataagcgtattaagtcctttaaggaacgtgttaataaagtagaattagtctttaca
gaggagtatagtagccaagtcgatggtgtacatttattcgaattaatctctgaaaagtcg
agtgaaatcaagataaagtatctaaatcaaaccattattattaccatgccaatgtataca
gagtgggcagaggatctgatttatatacttgaaaatttaaaggagcaacaattatga
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integrated database retrieval system
