Endozoicomonas euniceicola: NX720_13240
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Entry
NX720_13240 CDS
T08536
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eei
Endozoicomonas euniceicola
Pathway
eei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NX720_13240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eei03021
]
NX720_13240 (rpoC)
03400 DNA repair and recombination proteins [BR:
eei03400
]
NX720_13240 (rpoC)
Enzymes [BR:
eei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NX720_13240 (rpoC)
Transcription machinery [BR:
eei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NX720_13240 (rpoC)
DNA repair and recombination proteins [BR:
eei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NX720_13240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CopK
Motif
Other DBs
NCBI-ProteinID:
UYM13884
UniProt:
A0ABY6GNB2
LinkDB
All DBs
Position
3307140..3311351
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLLKTQGQTDEFDSIRIGLASPEMVRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVVDPGMTTLEKNQLLSDEQYYEALEEFGDDFDARM
GAEAIKALLNDIDLGEEVEMLREEIPQTNSETKLKKLSKRLKLVEAFHKSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEAKGLATTIKAAKKMVERETPEVWDVLADVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILAPANGEPIIVPSQDVVLGLYYITRERINAKGEGMAFVDIREVMRAYRTG
AVELHARVKVRVSEKYKDDDGVEHDRTFLADTTVGRMILWEIVPEGLPFELVNQTMKKKA
ISRLLNTCYRNVGLKETVIFADQMLYLGFNYATLSGASIGVNDFVIPDNKKDIIRDANEE
VREIENQFASGLVTAGEKYNKVIDIWSRANEMLAKSMMDNLKSDTVLNKQGEEEEQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTTNGLMMTPHIEGGDVVEPLGERIL
GRVVAVDVFKPGTEDEIAIPAGTLIDEAWVKRLEGMNVDEMKVRSPISCDTRHGICAKCY
GRDLGRGHLVNKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAQDNITVKNKGVAR
LLNMKSVERKDGTLVSVSRSGQLAIADEFGRERERYKLPYGAVVSVKEDAEVASGQVVAK
WDPHTHPIVTELSGTVKFLGFEEGITVKTQTDELTGLSNIEVLDPKDRPSAGKDIRPAIQ
LLDANGKELKLPNTDVPAQYFLPANALVNLADEATVEVGDIVARIPQQSGGNKDITGGLP
RVADLFEARKPKEHSILAEITGTIGFGKETKGKKRLVITPNDGSDPYEELIPKWRNLNVF
EGEQVTKGEVISDGPTNPHDVLRLLGVSDLARYIVNEIQDVYRLQGVKINDKHIETILRQ
MLRKVEISDTGDSTLIRGDQTEYTTVLEENDRLVAEDKFPAKFERVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHAERKKGREEPEFE
APVKVSASDVEAALSEALNFGEA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctactcaagacccagggccaaactgatgagtttgactctatt
cgtatcggtctggcttccccagagatggtacgttcctggtcttacggcgaagttaaaaag
ccggaaaccatcaattaccgtacgttcaagcctgagcgtgacggcctgttctgtgccaag
atttttggcccagttaaagattatgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggagttatctgtgagaagtgtggcgtagaagtcgcactggctaaagtacgtcgtgac
cgtatgggtcacatcgaactggccagcccggtggctcacatctggttcctgaagtccctg
ccatcccgtatcggtttgctgctggacatgaccctgcgtgatatcgaacgtgttctgtac
ttcgaatcttacgtagtggttgatccgggtatgacaacactggaaaaaaaccagctgttg
tctgacgagcaatactacgaagctctggaagagttcggcgacgactttgacgcgcgcatg
ggtgcggaagcgatcaaagccctgctgaacgacatcgacctgggcgaagaagtggaaatg
ctgcgtgaagaaattccgcagactaactctgaaaccaagctgaagaaactgtccaagcgt
ctgaagctggttgaggcgttccacaagtccggtaacaatccggaatggatgattctgacc
gttctgccggttctgccgcccgatctgcgtcctctggtacctctggatggcggtcgtttt
gcgacgtccgacctgaacgatctgtatcgtcgagtcatcaaccgtaacaaccgtctgaag
cgtctgctcgacctgaacgcgccagacatcattgtccgcaacgaaaagcgtatgctgcag
gaatctgtagacgcgctgctggacaacggtcgtcgtggtcgtgcgattaccggttctaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgttgggtaagcgtgtagactactccggtcgttcggtaatcaccgtaggtcctacc
ctgcgtctgcaccagtgtggtcttcctaagaagatggctctggagctgtttaagccgttc
atcttcggcaagctggaagccaaaggtctggcgaccactattaaggctgccaagaagatg
gttgagcgcgaaacacctgaggtgtgggacgttctggctgacgtaatccgtgaacacccg
gtgatgctgaaccgtgcgccaaccctgcaccgtcttggtatccaggcgttcgaaccggtt
ctgatcgaaggtaaagcgattcaactgcacccactggtgtgtgcggcgtacaacgctgac
tttgacggtgaccagatggcggtacacgtaccactgactctggaagcccagctggaagcc
cgtgccctgatgatgtccaccaacaacatcctggcacctgcgaacggcgaacctattatc
gtaccttcccaggacgtggtactgggtctgtactacatcactcgtgagcgtatcaacgcc
aagggtgaaggcatggcgttcgtggatatccgcgaagtgatgcgcgcttaccgtaccggc
gctgttgagctgcacgcccgggttaaagtacgtgtcagcgaaaaatacaaagacgacgat
ggtgtagaacacgatcgtaccttcctggcggacaccactgtaggtcgtatgatcctgtgg
gaaatcgttccggaaggtctgccttttgaactggtcaaccagaccatgaagaagaaggcc
atctctcgtctgttgaacacctgctaccgtaacgttggtctgaaagaaaccgttatcttt
gctgaccagatgctgtaccttggtttcaactacgcaacactgtccggcgcatccatcggt
gtgaatgacttcgttatccctgataacaagaaggacatcatccgtgacgccaatgaagaa
gttcgtgaaatcgaaaaccagtttgcttccggtctggtaacagcgggcgagaagtacaac
aaggtgatcgacatctggtcccgcgccaacgaaatgctggccaagtccatgatggacaac
ctgaaatccgacaccgttctgaataagcagggcgaagaggaagaacaggaatccttcaac
agcgtttacatgatggcggactccggtgctcgtggtagtgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggccaagccagacggctccatcatcgagaccccaattacc
gcgaacttccgtgaaggtctgaacgtactgcagtacttcatctctacccacggtgctcgt
aagggtctggcggataccgctctgaaaaccgcgaactccggttacctgacccgtcgtctg
gtagacgtggcgcaggatctggtggtgacggaagacgactgtggtaccaccaacggtctg
atgatgacaccgcacattgaaggcggtgacgtggttgaacctctgggtgaacgtatcctg
ggtcgtgttgtggccgtggacgtattcaagcctggtactgaagacgagattgctattcca
gccggaaccctgatcgatgaagcctgggttaagcgcctggaaggcatgaacgtcgatgaa
atgaaagtacgttctccgatcagctgtgacactcgccacggtatctgtgccaagtgctac
ggtcgtgacctgggtcgtggacatctggtgaacaagggtgaagcggttggtgttatcgct
gctcagtctatcggtgaaccgggcacacagctgaccatgcgtaccttccacatcggtggt
gctgcatcccgtaacgctgctcaggacaacattactgttaagaacaagggtgttgcccgt
ctgcttaacatgaagtccgttgagcgtaaagacggaaccctggtttctgtcagccgttcc
ggtcagctggcgattgccgatgaattcggtcgtgagcgtgagcgctacaagctgccttat
ggtgctgtcgtatccgttaaggaagacgctgaagtcgcttccggtcaggtggtggcgaag
tgggatccacacacgcacccaatcgtgaccgaactgtccggtaccgttaagtttctgggc
tttgaagaaggcatcaccgttaagactcagactgatgagctgaccggtctgtccaacatc
gaagtgctggatccgaaggatcgtccttctgctggtaaggacattcgtcctgcgattcag
ctgctggatgccaatggtaaagagctgaagctgcctaacactgacgtgcctgcgcagtac
ttcctgccagcaaacgccctggtgaacctggctgacgaggccactgttgaagtgggtgat
atcgttgcccgtattccacagcagtccggcggtaacaaggatatcaccggtggtctgcca
cgagtggccgacctgtttgaagcgcgtaagccgaaagagcactctatcctggctgaaatc
accggtactatcggtttcggtaaggaaaccaagggtaagaagcgtctggtgatcactcca
aacgacggtagcgatccgtacgaggagctgattcctaagtggcgtaacctgaacgtgttc
gagggtgagcaggtgaccaaaggtgaggttatctccgatggtcctaccaacccccacgac
gttctgcgtctattgggtgtgagtgacctggcccgctacatcgttaacgaaatccaggac
gtataccgtctgcagggtgtaaagattaacgataagcacatcgagacgattttgcgtcag
atgctgcgtaaggttgagatttctgataccggtgactccacgctgatccgtggtgaccag
actgagtacacgacggtactggaagagaacgatcgtctggttgcagaagataagttccct
gccaagttcgagcgtgtgctgctgggtatcactaaagcgtctctggcaaccgagtccttc
atctctgcggcttccttccaggagaccacacgagtgctgactgaagcggcggtaaccggt
aagcgtgattacctgcgcggtctgaaggaaaacgttgtggttggtcgtctgattccggca
ggtactggtcttgcttaccacgctgagcgtaagaaaggtcgtgaagagccagaatttgaa
gcacccgtcaaagtgtctgcttctgacgtggaagccgctctgtctgaagcgcttaacttc
ggcgaagcgtga
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integrated database retrieval system
