Endozoicomonas euniceicola: NX720_15065
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Entry
NX720_15065 CDS
T08536
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
eei
Endozoicomonas euniceicola
Pathway
eei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
eei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NX720_15065 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eei03021
]
NX720_15065 (rpoD)
Transcription machinery [BR:
eei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NX720_15065 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
DUF1615
LysM
HAUS-augmin3
Motif
Other DBs
NCBI-ProteinID:
UYM14219
UniProt:
A0ABY6GNB1
LinkDB
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Position
complement(3689025..3690857)
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AA seq
610 aa
AA seq
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MSANSQQQSRLKELISRGKEQGYLTYAEVNDHLPEDISDPDQVEDIIRMINDMGITVYET
APDADTLLMAEAETDEAAVEEAAAALAAVEQEAGRTTDPVRMYMREMGTVELLTREGEIQ
IAKRIEEGLREVMSALSQFPGSVQIVLDEYDRIIEEEGRLTDLISGYIDPDSDEAPAEEA
PIPSVQEMQDDFNDNDDEDDDEDEEPGGLDPEEARERFQALQEKHEQLINVLAEHERGTQ
AAKQALAEMAEPFMPLKLIPRVFDMLVFRIRNTLENIRGNERAIMQLCVRRSKMPRKIFL
KTFPGNETNLEWVDQVTAGSAAYSENIKAYREEIVRAQKKLSAIEKDYGITLNQIKDINR
KMSLGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
AVRMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDATIQSPIDRATGSGLKES
TRQVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTR
SDHLRSFLDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctaattcgcaacaacaatcccgactgaaagagcttatctctcgcggtaaggaa
cagggctacctgacttatgcagaggtaaacgaccatctgccggaagacatttctgatccg
gatcaggtcgaagacatcatccgcatgattaacgacatgggtattacggtctacgaaaca
gcgccggacgccgataccctgttgatggctgaagccgaaaccgacgaagcggcggtagaa
gaagccgctgcagcgcttgccgccgtggaacaggaggccggccgtaccaccgacccggta
cgtatgtacatgcgtgaaatgggcaccgtagaacttctgacccgtgaaggcgagattcag
atcgccaagcggatagaggaaggcctgcgtgaagtcatgtcagctctgtctcagtttcca
ggttccgtacaaattgtcctcgatgaatatgaccgcattattgaagaggaaggtcgtctg
accgacctgatcagtggttatattgatcccgactctgatgaagcgcccgctgaagaagca
cccattccaagcgttcaggagatgcaggacgacttcaacgacaacgacgatgaagacgac
gatgaagacgaagaacctggcggcctggaccctgaagaagcccgtgaacgctttcaagca
ctgcaggaaaagcacgaacagctgatcaacgttctggccgagcatgagcgtggcacacag
gccgctaaacaggctctggcagaaatggcagaaccgttcatgcccctcaagctgattcca
cgtgtgtttgacatgctggtattccgcatccgcaacaccctggaaaacatccgcggcaac
gaacgcgccatcatgcagctgtgtgtacgtcgttccaaaatgccacgtaagatcttcctg
aagactttccccggcaacgaaaccaacctggaatgggttgaccaggtgaccgctggcagc
gcggcttactctgaaaacatcaaggcgtatcgcgaagaaatcgttcgcgcccagaaaaag
ctgtctgcgattgagaaggattatggtatcaccctgaaccagatcaaagacatcaaccgt
aagatgtccctgggtgaagcccgcgcccgtcgcgctaaaaaggaaatggttgaggccaac
ctgcgtctggttatttctattgccaagaaatacaccaatcgcggcctgcaattcctggac
ctgattcaggaaggcaacattggcctgatgaaagcggtggacaagtttgaataccgtcgt
ggttacaagttctcaacttacgccacctggtggattcgtcaggcgatcacccgctctatc
gccgaccaggctcgtactatccgtattccggtacacatgatcgagaccattaacaaactg
aaccgcatctcccgtcagatgcttcaggaaatgggtcgtgaaccaacaccggaagagctg
gcagtgcgcatggaaatgccagaggataagattcgcaaagtactgaaaatttccaaagag
cctatctcgatggaaacaccgatcggtgatgatgaagactcccacctgggtgactttatc
gaagacgctaccattcagtctccgattgaccgggccaccggctccggcctgaaagagtct
acccgacaggtactgtccggactgacggctcgtgaagcaaaagtcctgcgcatgcgtttc
ggtatcgacatgaacaccgaccacactctggaagaagtgggcaaacagttcgacgttacc
cgtgagcgtatccgtcagatcgaagccaaggcattgcgcaaactgcgccatccgactcgc
tccgatcacctacgcagcttcctggacgaataa
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