Endozoicomonas euniceicola: NX720_15545
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Entry
NX720_15545 CDS
T08536
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eei
Endozoicomonas euniceicola
Pathway
eei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NX720_15545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eei03019
]
NX720_15545
03009 Ribosome biogenesis [BR:
eei03009
]
NX720_15545
Enzymes [BR:
eei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NX720_15545
Messenger RNA biogenesis [BR:
eei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NX720_15545
Ribosome biogenesis [BR:
eei03009
]
Prokaryotic type
rRNA helicases
NX720_15545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
AAA_19
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UYM14311
LinkDB
All DBs
Position
3778018..3779829
Genome browser
AA seq
603 aa
AA seq
DB search
MSDTETVPSFAEMPLAPAVIKAVQDVGYETPSPIQAQSIPHLLEGKDLLGLAQTGTGKTA
AFALPLLSRVDTKKRHPQILVLAPTRELAIQVAEAFQRYARHMPGFHVLPVYGGQDMRGQ
LRGLQRGAQVIVGTPGRVMDHLRRGSMKLDDLKAIVLDEADEMLRMGFVDDIEWIMEQTP
SERQVALFSATMPRQIRKIADTHLTDPVTVEIKSKTATVDTITQKVCMVSGYHKLDALTR
ILEVEPFDAMIIFVRTKTATVELAEKLEARGFSAAALNGDMSQALREKVIDRLKKSSLDI
LIATDVAARGLDVERMSHVVNYDIPYDTEAYVHRIGRTGRAGRQGTAILFATHRERRMLR
AIEQATRQRIDDMRLPSMRDVRDMRIRQFKEDVTKSLELGEEKLADFRNIVNELMTEGEM
SPEDLAAALCFMAQKERPFPDGKEPERQQRQRRERDDRRGERGDRPRRDRREDNEGMVRY
RVEVGREQGINPGDLVGAIANESKIPGKNIGHIRLFERCSSIYLPEGMDDSTLASLKQVK
VRNKPLEMSVWIDDGSVREERPRRRRRDGEFRRDRDRRSNASRSASHNNPSRKPRQRDRE
DRS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatactgaaaccgttccttcctttgcggaaatgcctcttgcccctgcagtgatc
aaagctgtacaggatgttggttacgaaaccccttctccgatccaggcgcaaagtattcct
catctgctagaaggtaaggatttgctgggtctggcgcagaccggtaccggcaaaaccgcc
gcgtttgctcttcctctgctgtctcgcgtagacactaagaaacgtcacccgcagattctg
gtgctggcacccacccgtgagctggcgattcaggtggcggaagctttccagcgttatgcc
cgtcacatgcctggtttccacgtactgccggtttacggtggtcaggatatgcgcggtcag
ctgcgtggcctgcaacgtggtgcccaggtcatcgtaggtactccgggacgtgtgatggat
cacctgcgtcgtggttccatgaagctggacgatctgaaagcgatcgtgctggatgaagcc
gacgaaatgctgcgcatgggctttgttgatgatatcgaatggatcatggaacagaccccc
agcgagcgtcaggtagccctgttctctgccaccatgccacgccagattcgcaaaattgcc
gatacccacctgaccgatccggtcaccgttgagatcaaatccaagacggctaccgtcgat
accatcacccagaaagtgtgtatggtcagtggctatcacaagctggacgccctgacacgt
atcctggaagtcgaacctttcgacgccatgatcatcttcgtgcgcaccaagacggctacc
gttgaactggctgaaaagctggaagcccgaggtttctctgccgctgccctcaacggcgac
atgtctcaggcactgcgtgaaaaagtgatcgaccgtctgaagaaaagctctctggatatc
ctgattgccaccgacgtcgcggctcgtggtctggacgttgagcgtatgtctcacgtggtc
aactatgacattccttacgacaccgaagcttatgtacaccgtattggtcgtaccggtcgt
gccggtcgtcagggtactgccatcctgtttgccactcaccgtgagcgtcgtatgctgcgt
gctatcgagcaggcgactcgtcagcgtatcgacgatatgcgtctgccttccatgcgtgac
gtacgtgacatgcgtatccgccagttcaaggaagacgttaccaagtctctggagctgggc
gaagagaagctggctgatttccgtaacatcgtcaacgagctgatgactgaaggcgaaatg
agtccggaagacctggcggcggccctgtgctttatggctcagaaagaacgtccgttcccg
gacggcaaagagccagagcgtcagcaacgtcagcgccgtgagcgtgatgatcgtcgtggt
gaacgtggtgaccgtccacgccgtgatcgtcgtgaagacaacgaaggcatggttcgctac
cgtgttgaagtgggtcgtgagcagggtattaacccgggcgacctggtgggggccattgcc
aacgaaagcaagattcccggtaagaacatcggtcatatccgcctgttcgagcgctgttct
tccatctacctgccagaaggcatggacgattctacgctggcttccctgaagcaggtgaag
gttcgtaacaagccgctggaaatgagtgtatggattgacgatggcagtgtccgtgaagaa
cgtccacgccgtcgccgtcgtgatggtgaattccgtcgtgaccgtgaccgtcgcagcaat
gcttcccgcagcgcttcacacaacaacccttcccgcaagccacgtcagcgtgatcgtgaa
gatcgttcataa
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