Elizabethkingia anophelis JM-87: BBD30_04560
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Entry
BBD30_04560 CDS
T04743
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
een
Elizabethkingia anophelis JM-87
Pathway
een03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
een00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD30_04560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
een03019
]
BBD30_04560
03400 DNA repair and recombination proteins [BR:
een03400
]
BBD30_04560
Enzymes [BR:
een01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBD30_04560
Messenger RNA biogenesis [BR:
een03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD30_04560
DNA repair and recombination proteins [BR:
een03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBD30_04560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
GntR
PF0610-like_N
zf-CXXC
HTH_36
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AQW93516
LinkDB
All DBs
Position
complement(1003111..1005012)
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AA seq
633 aa
AA seq
DB search
MIPSRSYNEQILDQTLKQFWGYDYFRDQQKEIILSVLSSNDTLALLPTGGGKSLCYQLPS
LLLEGATVVISPLLALMKEQVHELNLRGIPAAYLSSEFDDEQEELIYQNLKNEEYRLLYV
SPERLSNRNFLENIADAKISLIAVDEAHCISEWGSDFRPSYQNIKDFRQMYPYLPCLALT
ATASVKVMQEIQQKLDFKKTNIFKKSYRRDNLYIQLRELSDKYNHILYYLRSNEKSGLIY
VRTRKEAEYLSNWLKISGIEQVDYYHAGLPVKEKQIRQNYWLSKNNYTLVSTNAFGMGID
KDDVGFVIHLSPSPSIENYYQEIGRAGRNGQNAETILLWNQSELTQIDDLIKSQLASKTD
YQKVCSYVYSFCQVAEHELPEGFFEIQTNKIQNLTKISRPKIVSILRFLHNQEIIYLKES
KGMSSLELKFDISEVESLGKKDSFFVEKLSRALDGVATHRTYFREKKLTDKMNVDEQTIR
VRLRELHEKGLVDYFDGNSAGIRFLMPRNDKELQNRYWNLFASIQKNKMQKWEEMKYFIR
DTSYCKMRLILSYFGEKETQNCGKCSYCLTSKTGTSDREYKKIIFEALMRSPMTLDELAV
HLKFYPKDELLEHLKILLDRGQVRMLNYKTYTL
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgattccgagccggtcctataatgaacagattttagatcaaacccttaagcaattttgg
ggttatgattattttagagatcagcaaaaagaaattatcctgtctgtcttatcctccaat
gatacattagctttactacctacaggaggagggaaatctttatgctaccaattaccatct
ttgcttttagaaggtgctacagtagtaatatctccgcttctggctttaatgaaagagcag
gttcatgagcttaatctaagaggtattcctgctgcctatcttagttccgaattcgatgat
gaacaagaagagcttatttatcagaatctcaagaatgaagaatataggttgctttatgtt
tccccggaaagattatccaacaggaattttctggaaaatattgcggatgccaaaatctcg
cttattgctgtagacgaagctcattgtatttcggaatggggtagtgattttcgcccgagt
tatcagaatataaaggatttcagacagatgtatccatatcttccgtgtctggcattaaca
gcaacagcttctgttaaagttatgcaggaaattcagcaaaaactggacttcaaaaagaca
aatattttcaaaaagtcttacaggagagataatctttatatccagctgagagagctttca
gataagtataatcatattctgtattatctcagaagtaatgaaaaatcgggtcttatttat
gtaagaaccagaaaagaagcggaatatctgagtaattggttaaagattagtggtatagag
caggtggattattatcatgcaggattacctgtgaaagaaaagcagatacgtcaaaattat
tggcttagtaaaaataactatacccttgtttccactaatgcatttggaatgggtattgat
aaagatgatgtaggatttgtaatacacctttccccatctccgtctattgaaaattattat
caggaaataggccgtgccggaagaaacggacaaaacgcggaaactattttactatggaat
cagagtgaacttactcagattgatgatctcataaaaagtcaactggccagtaaaacagat
taccagaaagtctgttcttatgtatattctttttgtcaggttgcagaacatgagcttccg
gaaggtttctttgaaattcaaaccaataagattcagaatcttactaaaatttcccgtccc
aaaatagtatccattctcaggtttcttcataatcaggaaatcatttatctgaaagaatct
aaaggtatgtcttctcttgagttaaaatttgatatctcagaagttgagagtctgggaaag
aaagatagcttttttgttgaaaagttatcccgtgcactagacggagttgctacacatagg
acttattttcgggagaaaaagcttactgataaaatgaatgtcgatgagcagacaataagg
gtgcgcctaagagaattgcatgaaaaggggttggtagattattttgatggcaattcagcc
ggaattagatttctgatgccacgaaatgacaaagaactgcaaaacagatactggaatcta
ttcgccagcatacaaaaaaataaaatgcagaaatgggaggaaatgaaatattttatcaga
gatacttcttactgcaaaatgagacttattctctcttattttggagaaaaagaaacacaa
aactgtgggaaatgcagctattgcctaacaagtaaaacgggaaccagcgacagagaatat
aagaagatcatttttgaagctcttatgcggtcgccgatgacattggatgaactggcagtt
catctgaaattttatcccaaagatgaactcttggagcatctgaaaattttattggacaga
ggacaagtcagaatgttgaattataaaacttatacactataa
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