Elizabethkingia anophelis JM-87: BBD30_05755
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Entry
BBD30_05755 CDS
T04743
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
een
Elizabethkingia anophelis JM-87
Pathway
een03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
een00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD30_05755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
een03021
]
BBD30_05755
03019 Messenger RNA biogenesis [BR:
een03019
]
BBD30_05755
Transcription machinery [BR:
een03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBD30_05755
Messenger RNA biogenesis [BR:
een03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBD30_05755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
AAA
PRC2_EED_ins
Motif
Other DBs
NCBI-ProteinID:
AQW93733
LinkDB
All DBs
Position
complement(1251614..1253368)
Genome browser
AA seq
584 aa
AA seq
DB search
MFDIESLKSKSDTELTKISKDLGIGVKKTSDINEKIYAILDFQASNPQTIKDYLGPQDKG
NDAGNEEAAQPKKRGRKPAAKAEVVKTPEETAKPEEPVKEARKKVEVPKAEAPVEEAAKV
TEETSQPEKKQRKRVTKAPQPAEAKTTPEEKAPETSESAEVVAPAKKETQAVPQQKNNNQ
NNNNNNQNRQHHHNKERNNGDVKNSEPQKKEYSFDGIVTVEGVLEILPDNYGFLRSSDFS
YISSPDDVYVSTSQIKNYGLKTGDTVKGIVRLPKEGEKYFSLQRPTEVNGRDLAYIKDRV
AFEFLTPLFPQEKFNLAGKNSTLSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANS
ISANHPEAYMMVLLIDERPEEVTDMQRSVNAEVIASTFDEAADKHVKVANLVLSKAQRLV
ECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARKIEGGGSLT
IIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAVDLISSSTRRDDLLHDE
VTQQRMWIMRKYLADMNPVEAMEFVKKHMQSTVNNEEFLMSMNK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacattgaaagtctaaagtcaaaatcggataccgaattgacgaaaatctcaaaa
gatttaggtattggtgtgaagaaaacttccgatattaacgaaaagatttacgctatattg
gattttcaggcatccaacccccaaacgattaaggattacctcggaccacaggataaagga
aatgatgccggaaatgaagaagctgcacaacctaagaaaagaggaaggaagcctgctgct
aaagctgaagtggtaaagactccggaagaaaccgctaagcctgaagagcctgtaaaagag
gccagaaagaaagtagaggttcctaaggctgaagctcctgtagaggaagctgctaaagtt
accgaagaaactagtcagccagaaaaaaagcaaagaaaaagagttacaaaagctccacaa
cctgcagaggcaaaaacaacgccggaagaaaaagctccggaaacttcagaatctgctgaa
gttgtggctcctgccaaaaaagaaacacaagctgttcctcagcaaaaaaataataatcag
aacaataacaacaataatcagaacagacaacatcaccataataaggaaagaaataatgga
gatgtaaagaattctgaacctcagaagaaggaatatagcttcgatggtattgtaaccgtt
gaaggagttctggaaatcttgccggacaattatggtttccttagatcctcagactttagc
tatatctcgtctccggatgatgtatacgtatctacaagtcagatcaagaactatggatta
aagactggtgatacggtaaaaggtattgttcgtttaccaaaagaaggagagaagtatttc
tctttacaacgtcctacggaagttaacggaagagatcttgcttatattaaggatagagta
gcattcgaattcctaacaccgcttttcccacaggagaaatttaacctggctggaaaaaat
tcaacactttcaaccagaattgtagacctttttgcacccattggtaaaggtcagcgtgct
atgattgtagcacagcctaaaacgggtaaaacaatgctgttgaaagatattgccaatagt
atttcggcaaatcatccggaagcttatatgatggtcttactaattgatgaaagacccgaa
gaagttaccgatatgcagagaagtgtaaatgcagaagttattgcatctacgttcgatgaa
gctgccgacaagcatgtaaaagttgccaatctggtattgtctaaagctcaaagacttgta
gaatgtggtcatgatgttgtaattcttctggattccattacacgtttagcaagagcttat
aatactgttacccctgcatccggaaaaatactttctggtggtgtggatgcgaatgcattg
cacaagccaaagagattctttggtgcagctagaaaaattgaaggcggaggttctttaact
attattgcaactgcattaattgatacaggatctaaaatggacgaagtgatctttgaagaa
ttcaaaggaacgggtaacatggaacttcaattagatagaaaaattgctaataaacgtatt
tatcctgctgtagaccttatctcttccagtacacgtagagatgatttgttacatgacgag
gttacccagcaaagaatgtggattatgcgtaaataccttgctgatatgaaccctgtagaa
gcaatggagtttgtgaaaaaacacatgcagtctactgtaaataatgaagaattcttaatg
tccatgaacaaatag
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