Elizabethkingia anophelis JM-87: BBD30_16925
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Entry
BBD30_16925 CDS
T04743
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
een
Elizabethkingia anophelis JM-87
Pathway
een03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
een00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD30_16925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
een03019
]
BBD30_16925
Enzymes [BR:
een01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD30_16925
Messenger RNA biogenesis [BR:
een03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD30_16925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
CMS1
PINIT
Motif
Other DBs
NCBI-ProteinID:
AQW95737
LinkDB
All DBs
Position
complement(3714628..3715974)
Genome browser
AA seq
448 aa
AA seq
DB search
MITFEDFELPKNLFSALEQNGITVPTPIQLKSFKPILSGRDVMGIAQTGTGKTLAYLLPV
LKMWKYSKADNPTVLVLVPTRELVVQVTEILENLTENMTARVIGVYGGKNINTQKLLFNN
GCDILVGTPGRVLDLAIDNAISLKDVRHLVIDEFDEMLNLGFRPQLTHIFEIMRQKRQNI
LFSATMTEAVDTMLDEYFNGPEEISLAKSGTPLEKINQQGYKVENFNTKINLLKHLLESD
ESMSKVLVFANNKKHADYLFNTLDELYPDQFDVIHSNKSQNYRLRAMRKFEDAEVRGLIT
TDVMARGLDISDITHVFNFEIPEVPEQYIHRIGRTGRADKDGTAISFITKKEEALLLEIE
VLMNKELQFIDFPEEVTINPKKIESEKEEVKMKNPTKAPDISQGGGAFHEKKDKNKKINL
GGPTKRKPPKTKPANRNQQKQKAKRKKR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgataacatttgaggatttcgaactaccgaaaaatcttttttcggcattagagcaaaac
ggaataactgtaccaactcctattcagctaaagagctttaaacctattttatccggtcgg
gatgttatgggtattgcacaaactggtacaggtaaaaccctggcttatctgctgccggtt
cttaaaatgtggaaatactctaaggcagataaccctacagtattggttttagtgccaacc
cgtgagcttgttgtacaggtaaccgaaattcttgaaaatctaaccgaaaatatgacagcg
cgcgttataggcgtgtatggaggtaaaaatatcaatactcagaaattattgtttaacaat
ggctgcgatattttggtaggtacacctgggcgtgtactggatttagcaatagataatgca
ataagcctgaaagatgtgcgtcatcttgttattgatgagtttgatgaaatgctaaattta
ggattccgtccacagttaactcatatctttgaaattatgcgtcagaaaagacagaatata
ttattttctgcaacaatgacggaggctgttgataccatgttggatgaatactttaatggt
cctgaagaaataagcttagctaagtcgggaactccgctggaaaagattaatcagcaaggt
tataaagttgagaattttaatactaaaataaatttattaaagcaccttttggaaagcgat
gaaagtatgtctaaagtattggtttttgctaataataagaaacatgcagattatcttttc
aatacattagacgaattatacccggatcagtttgatgtaattcactctaataaatcccag
aactacaggcttagggccatgcgtaagtttgaagatgcagaagtgcgcggtcttattaca
acagatgtaatggcgcgtggtctggatatttcagatatcacccatgtattcaattttgaa
attcctgaagttccggaacagtatatccaccgtataggtcgtacaggtcgtgcagataaa
gatggtactgcgatatctttcatcactaaaaaagaagaggctttacttctggaaattgaa
gttttaatgaacaaagaacttcagtttattgattttcctgaagaagtaaccattaatcct
aaaaagattgagtctgaaaaagaagaggtcaaaatgaagaatcctaccaaagctccggat
atttcgcagggtggtggagcttttcatgaaaagaaggataaaaataagaagattaatctt
ggtggtcctactaaaagaaaaccacctaaaacaaagcctgctaacagaaatcagcagaag
caaaaagccaaaagaaaaaaaagataa
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