Elizabethkingia anophelis JM-87: BBD30_18450
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Entry
BBD30_18450 CDS
T04743
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
een
Elizabethkingia anophelis JM-87
Pathway
een03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
een00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD30_18450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
een03019
]
BBD30_18450
Enzymes [BR:
een01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD30_18450
Messenger RNA biogenesis [BR:
een03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD30_18450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AQW96009
UniProt:
A0A085CDZ8
LinkDB
All DBs
Position
complement(4063713..4064987)
Genome browser
AA seq
424 aa
AA seq
DB search
MNFNDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPIL
QLLTERSENKHRKGVVKALILTPTRELAIQIEENFEAYGRHLPLKTMVIFGGVKQGAQEE
KLKRGVDILVATPGRLLDFIGQGIITLKNLDIFVLDEADRMLDMGFVHDVKRILKYLPEK
RQNLFLSATMPKEIQKLASEILVNPVKVEVAPVSSTAETIDQSVFFVEKEDKINLLIHLL
QDQSLSPVIVFSRTKHGADKIAKKLNQSKISAEAIHGNKSQNARQNALNNFKSGKTRILV
ATDIAARGIDIDNLKYVVNFELSDVAETYVHRIGRTGRAGASGTSFSFVDGLDLVNLRNT
EKLIGKKIFVNKEHPFHTDNLVEQKRDSNNKPVPAGARPANTGNNRNSRNTKSSKKPFFR
GKKK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttcaacgatctaaaattaatagaacctatttccaaagcattgcaggaagaaggt
tacaagactccgacttctattcaggagcaagcaataccgaaaattcttgccggaaaagat
ctgttaggatgcgcgcaaacaggtaccggaaaaacggcagcttttgcaattcccatctta
cagttgcttactgaaagaagtgagaacaaacatcggaaaggtgttgtaaaagcattgata
ttaacgcctactagagagctggcaatacaaatagaagagaactttgaagcttatggaaga
cacttgccattgaaaacaatggtaatcttcggtggagtaaaacaaggagctcaggaagaa
aagctaaaaagaggagtagatatacttgttgccactcctggtcgtttactggactttata
ggacaggggattatcactttgaaaaacctggatatttttgttctggatgaggccgacaga
atgctcgatatgggctttgttcacgatgtaaagcgtattttaaagtatctgccggagaaa
agacaaaatcttttcctttccgcaacaatgcccaaagagatacaaaaactagcatcagag
atactggtaaatcctgtaaaagtagaagttgcacctgtatcatcaacagctgaaacaatc
gatcagtcagttttctttgtagagaaagaagataagattaatcttcttattcacttatta
caggatcaaagtttatctcccgttattgtcttctctcgtacgaagcacggagccgataaa
attgctaaaaaacttaatcagtcaaaaatttctgctgaagcgattcatggtaacaaatcc
cagaatgcaaggcagaacgctctgaataatttcaagagtggaaaaacaagaattcttgta
gctactgatattgcagcgagaggaattgatattgataatctgaaatatgttgtaaacttt
gaactttcagatgtagcggaaacctatgtacaccgtatcggaagaaccggcagagcagga
gcttcaggaacttcattctcatttgttgatggattggatctggtaaatctgagaaataca
gagaaattaattggtaagaaaatctttgtaaacaaagagcatccattccatacagataat
ctggtagagcaaaaaagggattctaacaataagccagtgcctgcaggagcaagacctgcg
aatactgggaataatagaaacagcagaaatacaaaatcttctaaaaagcctttttttaga
ggaaagaagaaatag
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